PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007159t1
Common NameTCM_007159
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 263aa    MW: 27989.1 Da    PI: 8.1328
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007159t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH110.000781581961154
                       HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        R +++ +++  L++l+ +      +K + a++L +A+ YI+ L
  Thecc1EG007159t1 158 ARKEKVGDRITALQQLVSPF-----GKTDTASVLHEAMGYIRFL 196
                       577888899********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.477147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-11154208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-4156201No hitNo description
Gene3DG3DSA:4.10.280.106.2E-7157203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MMAETDQGFE GDQGTATTTS FPQLLFGGDD DVVSLDLGQS FNYTYSSFPA HEKTPKMLCF  60
GGQQTDAEIV FGESAASTTK TATTPQRSGV TCSDSSSASS GNNNKSVKTP SKSTRKRDRG  120
RESVECTGAI VTAQPVSQRT NKKSKVENPA TSTGHAKARK EKVGDRITAL QQLVSPFGKT  180
DTASVLHEAM GYIRFLHDQV QVLCTPYLQH LPDGGKNGGE ESRKDLKSRG LCLVPVACTL  240
HVANSNGADF WSPAMGNNVT KQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042552.20.0PREDICTED: transcription factor bHLH113 isoform X1
SwissprotQ9LT679e-53BH113_ARATH; Transcription factor bHLH113
TrEMBLA0A061E7Y50.0A0A061E7Y5_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1
STRINGEOX983830.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74022234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]