PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG007138t1
Common NameTCM_007138
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 246aa    MW: 27381.6 Da    PI: 8.8813
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG007138t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-19954147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEdell ++v +lG+++W++I++ ++ gR++k+c++rw + 
  Thecc1EG007138t1  9 KGPWSPEEDELLRKLVLRLGPRNWSLISKSIP-GRSGKSCRLRWCNQ 54
                      79******************************.***********985 PP

2Myb_DNA-binding59.85.8e-1963105347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++T+eEde +v+a++++G++ W+tIar ++ gRt++ +k++w++ 
  Thecc1EG007138t1  63 AFTPEEDETIVRAHARYGNK-WATIARLLN-GRTDNAVKNHWNST 105
                       79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.624459IPR017930Myb domain
SuperFamilySSF466892.84E-316102IPR009057Homeodomain-like
SMARTSM007173.5E-16857IPR001005SANT/Myb domain
PfamPF002495.6E-19954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-251062IPR009057Homeodomain-like
CDDcd001677.26E-151153No hitNo description
SMARTSM007171.7E-1560108IPR001005SANT/Myb domain
PROSITE profilePS5129421.93661110IPR017930Myb domain
PfamPF002494.3E-1663105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2363110IPR009057Homeodomain-like
CDDcd001674.28E-1263106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDQDFDRVKG PWSPEEDELL RKLVLRLGPR NWSLISKSIP GRSGKSCRLR WCNQLSPEVE  60
HRAFTPEEDE TIVRAHARYG NKWATIARLL NGRTDNAVKN HWNSTLKRKL SMEDGDSLQE  120
TGKRSAKSQR SASSNNMGSP SGSDVSDLGL NVAESERSGV STELTLGRSS NESSELNNDN  180
SSSEKVLLAQ KHEMGTKTAT VDPNLMAAMQ EMIRKEVRDC MAEFGFQSEG VRNAGFKRIG  240
IRRID*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-4081103105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-39811057159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-39811057159MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-4081103105C-Myb DNA-Binding Domain
1msf_C5e-4081103105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042527.21e-180PREDICTED: transcription factor MYB44
SwissprotO231601e-71MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A061E7W21e-179A0A061E7W2_THECC; Myb domain protein 73, putative
STRINGEOX983581e-180(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.12e-69myb domain protein 73
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]