PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007083t1

Common Name

TCM_007083

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 338aa MW: 37144.9 Da PI: 7.8153

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007083t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.2	3e-13	85	132	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er RR+++++ f++L llP++ +K +K++i+ +Av+YI+ Lq Thecc1EG007083t1 85 MHIWTERERRKKMRNMFANLHALLPQL----PPKADKSTIVDEAVNYIRTLQ 132 56678*******************6....39****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.973	81	131	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-16	83	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-15	84	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.05E-10	84	129	No hit	No description
Pfam	PF00010	1.7E-10	86	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.8E-9	89	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	9.99E-6	217	268	No hit	No description
Gene3D	G3DSA:3.30.70.260	6.5E-5	219	268	No hit	No description
CDD	cd04873	2.39E-5	221	264	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MSEEGGHDSF LLWDSQSWAL SNSDNNSAGS EEKSGKNQQE QETLRDEAKK NKRGRGGGSV 60 GENGKGSGEV REGKGGGGAE SDHEMHIWTE RERRKKMRNM FANLHALLPQ LPPKADKSTI 120 VDEAVNYIRT LQQTLQKLQK QKLERLEGAI NFGCEPSMMT TQKQALDSRE AFLADQVSSS 180 DLANISATNF SSSLSVSQFP VLFQTWTSSN VVLNICGNEA QISVCSAKKP GLFSAICYIL 240 EKHKIEVMSA HVSSDSDQSM FMIQAQVSLL EELPVSCQRH FKPTKCSNRL QVRSCAGSLP 300 DHTRKLGPQI SLLLWVKATR DGVNLSPSEK ILFLPTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970666.1	0.0	PREDICTED: transcription factor bHLH95
TrEMBL	A0A061E7Q6	0.0	A0A061E7Q6_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOX98283	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5074	25	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	7e-43	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG007083t1
Entrez Gene	18607955

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]