PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006998t2

Common Name

TCM_006998

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 326aa MW: 36873.6 Da PI: 9.8589

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006998t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105	4.4e-33	253	308	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Thecc1EG006998t2 253 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 308 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.07E-18	250	311	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.115	250	310	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-29	251	311	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-27	253	308	IPR006447	Myb domain, plants
Pfam	PF00249	4.6E-8	255	306	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MGSVPPELSL DFRPTFVPKT ISNFLKEVSM VGNVSDKVSK VDAFVKGLEE EMRKIDAFKP 60 IVALKEESMQ CVTRNVEPVL EEFIPLKNNK KETKHSEEDG ASITTKKDKD PNNNNYNINK 120 DKKNWMSSVQ LWNTDDDDYR STDHKLDTKR NDEDPFQGCK NRGSARAFMP FKPNLGLAVR 180 KEEKEEIPVH GLTLLTPGIK NLKEESGSTG SRTSCSRAVS SSAPNAQSNF RSGPQPLAHH 240 LQQQQQQQQT ARKQRRCWSP ELHRRFVNAL QQLGGSQVAT PKQIRELMQV DGLTNDEVKS 300 HLQKYRLHTR RLPPSTTTPA NQSVVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-13	253	306	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-13	253	306	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-13	253	306	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-13	253	306	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-13	253	306	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-13	253	306	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-13	253	306	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-13	253	306	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-13	253	306	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-13	253	306	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-13	253	306	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-13	253	306	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007042351.2	0.0	PREDICTED: myb family transcription factor EFM
TrEMBL	A0A061E7H9	0.0	A0A061E7H9_THECC; Homeodomain-like superfamily protein, putative isoform 2 (Fragment)
STRING	EOX98182	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.2	3e-44	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG006998t2
Entrez Gene	18607883

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]