PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006998t1

Common Name

TCM_006998

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 411aa MW: 45702.1 Da PI: 8.2244

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006998t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.3e-33	265	320	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Thecc1EG006998t1 265 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 320 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.115	262	322	IPR017930	Myb domain
SuperFamily	SSF46689	4.35E-18	262	323	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-29	263	323	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-27	265	320	IPR006447	Myb domain, plants
Pfam	PF00249	6.5E-8	267	318	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence Send to blast
MGSVPPELSL DFRPTFVPKT ISNFLKEVSM VGNVSDKVSK VDAFVKGLEE EMRKIDAFKR 60 ELPLCMLLLN DAIVALKEES MQCVTRNVEP VLEEFIPLKN NKKETKHSEE DGASITTKKD 120 KDPNNNNYNI NKDKKNWMSS VQLWNTDDDD YRSTDHKLDT KRNDEDPFQG CKNRGSARAF 180 MPFKPNLGLA VRKEEKEEIP VHGLTLLTPG IKNLKEESGS TGSRTSCSRA VSSSAPNAQS 240 NFRSGPQPLA HHLQQQQQQQ QTARKQRRCW SPELHRRFVN ALQQLGGSQV ATPKQIRELM 300 QVDGLTNDEV KSHLQKYRLH TRRLPPSTTT PANQSVVVLG SGLWISQDQY GESSKGSSSQ 360 SGSPQGPLQL AANTGGTSTT GGDSMEDDED AKSESYSWKS HIHKPGKDDV *

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence Send to blast

MGSVPPELSL DFRPTFVPKT ISNFLKEVSM VGNVSDKVSK VDAFVKGLEE EMRKIDAFKR  60
ELPLCMLLLN DAIVALKEES MQCVTRNVEP VLEEFIPLKN NKKETKHSEE DGASITTKKD  120
KDPNNNNYNI NKDKKNWMSS VQLWNTDDDD YRSTDHKLDT KRNDEDPFQG CKNRGSARAF  180
MPFKPNLGLA VRKEEKEEIP VHGLTLLTPG IKNLKEESGS TGSRTSCSRA VSSSAPNAQS  240
NFRSGPQPLA HHLQQQQQQQ QTARKQRRCW SPELHRRFVN ALQQLGGSQV ATPKQIRELM  300
QVDGLTNDEV KSHLQKYRLH TRRLPPSTTT PANQSVVVLG SGLWISQDQY GESSKGSSSQ  360
SGSPQGPLQL AANTGGTSTT GGDSMEDDED AKSESYSWKS HIHKPGKDDV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-14	265	318	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-14	265	318	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-14	265	318	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-14	265	318	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-13	265	318	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007042351.2	0.0	PREDICTED: myb family transcription factor EFM
TrEMBL	A0A061E0R0	0.0	A0A061E0R0_THECC; Homeodomain-like superfamily protein, putative isoform 1
STRING	EOX98182	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14535	10	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	3e-54	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG006998t1
Entrez Gene	18607883

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]