PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006971t4 | ||||||||
Common Name | TCM_006971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 248aa MW: 28679.7 Da PI: 9.8344 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 63.8 | 2.6e-20 | 145 | 235 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 vl ps+ + ++++lp fae+h +g++ ++l+ ++g++W v++ yr+++ +++GW eF +n+L egD++vF+l +++ef l+v+ Thecc1EG006971t4 145 VLRPSYLYRGCIMYLPSCFAEKHlSGVSG---FIKLQLPDGKQWPVRCLYRGGR--AKFSQGWYEFTLENNLGEGDVCVFELLRSREFVLKVT 232 7889*******************866743...5***************666665..5699**********************999******** PP EE- CS B3 96 vfr 98 vfr Thecc1EG006971t4 233 VFR 235 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.206 | 1 | 46 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.3E-7 | 2 | 39 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-7 | 2 | 39 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.8E-25 | 134 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-26 | 135 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.29E-24 | 140 | 235 | No hit | No description |
SMART | SM01019 | 5.6E-23 | 142 | 237 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.465 | 142 | 237 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-18 | 145 | 235 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010048 | Biological Process | vernalization response | ||||
GO:0005654 | Cellular Component | nucleoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
KKADNKVWFQ EGWQEFVERY YIRVGYFLIF RYEGNSAFSN LFGGTKLNNC INWTGEVNLH 60 TSKGVNNQPI RGAELPKPKK PGRKKRKFDP NEQDSSVGHE DEVEMRFRFY ESASARKRTV 120 TAEERERAIN AAKAFEPTNP FCRVVLRPSY LYRGCIMYLP SCFAEKHLSG VSGFIKLQLP 180 DGKQWPVRCL YRGGRAKFSQ GWYEFTLENN LGEGDVCVFE LLRSREFVLK VTVFRVLEST 240 GLMNRPQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 1e-78 | 108 | 238 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 1e-78 | 108 | 238 | 15 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 86 | PKKPGRKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017971809.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X4 | ||||
Swissprot | Q8L3W1 | 1e-106 | VRN1_ARATH; B3 domain-containing transcription factor VRN1 | ||||
TrEMBL | A0A061E7B2 | 0.0 | A0A061E7B2_THECC; DNA binding protein, putative isoform 4 (Fragment) | ||||
STRING | EOX98141 | 1e-161 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-84 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006971t4 |
Entrez Gene | 18607858 |
Publications ? help Back to Top | |||
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