PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006970t1

Common Name

TCM_006970

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Protein Properties

Length: 466aa MW: 53888.9 Da PI: 8.6482

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006970t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.8	3.5e-17	37	128	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk+ +p+ +++ l +pkkf+ ++g++ s t+ ++gr+W++ l +k ++r++l +GW eFv+ n ++ g f++F+++++s+f + Thecc1EG006970t1 37 FFKIILPHTIAEKK-LKIPKKFVGKFGHE--LSSLATFVLPNGRKWKIGL--TKADDRIWLDDGWHEFVEYNSIRYGYFLIFRYERNSTF--H 122 77777676666665.******999965..7889***********..******************************999999..9 PP EEEE-S CS B3 94 vkvfrk 99 v +f++ Thecc1EG006970t1 123 VIIFDN 128 999987 PP
2	B3	50.3	4.3e-16	377	461	11	98
HHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++s+ + +p fa+e+ +g++ +++ed++gr+W ++l+ r++ ++ +l+kG +F ++n+LkegD++ F+l +++ + ++++fr Thecc1EG006970t1 377 FNSSTMPVPAGFAAEYlSGVT-D--HIRVEDSDGREWFIELR-RQNNCTLILRKGCHRFWRDNNLKEGDVCFFELRDKKAAVHKISIFR 461 6677899*******86664.3..5***********5.666678***********************987688877777777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	9.5E-26	32	131	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.96E-24	33	131	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.001	36	129	IPR003340	B3 DNA binding domain
CDD	cd10017	1.27E-17	36	127	No hit	No description
SMART	SM01019	7.7E-17	37	129	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-13	37	128	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	7.5E-19	361	463	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.73E-18	361	462	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.44E-14	366	461	No hit	No description
PROSITE profile	PS50863	11.871	367	463	IPR003340	B3 DNA binding domain
SMART	SM01019	1.0E-10	368	463	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-14	376	462	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MHVIQDIFFE GLNKLMAHRT RKRPRSNHVV EEESLHFFKI ILPHTIAEKK LKIPKKFVGK 60 FGHELSSLAT FVLPNGRKWK IGLTKADDRI WLDDGWHEFV EYNSIRYGYF LIFRYERNST 120 FHVIIFDNSA CEVDYPSYVP SNDEELNDGE SEKHSIHQDS ETEEDDSPEF LGVKAPNLDE 180 RTNREAIISG KQAASSQQRL VRKPQGDAAS HKNAEVKQAK VTGVRRCKTE EVEFDHLNES 240 RQINSNIKEL RRSHRLLPSK SHLMNQNATG IHDQDLSVQL RDLKQQFDGK KLKITIQRAN 300 LQSLEVMHKG NEANKKTESG KQGQHGSIQD EETEIYVSRM FFGISSTSRD RERAIRAVEV 360 IKPMNPCFMI ILRRCHFNSS TMPVPAGFAA EYLSGVTDHI RVEDSDGREW FIELRRQNNC 420 TLILRKGCHR FWRDNNLKEG DVCFFELRDK KAAVHKISIF RADSN*

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MHVIQDIFFE GLNKLMAHRT RKRPRSNHVV EEESLHFFKI ILPHTIAEKK LKIPKKFVGK  60
FGHELSSLAT FVLPNGRKWK IGLTKADDRI WLDDGWHEFV EYNSIRYGYF LIFRYERNST  120
FHVIIFDNSA CEVDYPSYVP SNDEELNDGE SEKHSIHQDS ETEEDDSPEF LGVKAPNLDE  180
RTNREAIISG KQAASSQQRL VRKPQGDAAS HKNAEVKQAK VTGVRRCKTE EVEFDHLNES  240
RQINSNIKEL RRSHRLLPSK SHLMNQNATG IHDQDLSVQL RDLKQQFDGK KLKITIQRAN  300
LQSLEVMHKG NEANKKTESG KQGQHGSIQD EETEIYVSRM FFGISSTSRD RERAIRAVEV  360
IKPMNPCFMI ILRRCHFNSS TMPVPAGFAA EYLSGVTDHI RVEDSDGREW FIELRRQNNC  420
TLILRKGCHR FWRDNNLKEG DVCFFELRDK KAAVHKISIF RADSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	2e-16	347	463	28	143	B3 domain-containing transcription factor VRN1
4i1k_B	2e-16	347	463	28	143	B3 domain-containing transcription factor VRN1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007042308.2	0.0	PREDICTED: B3 domain-containing protein Os03g0619600
TrEMBL	A0A061DZE9	0.0	A0A061DZE9_THECC; Uncharacterized protein
STRING	EOX98139	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1591	25	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	3e-30	B3 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG006970t1
Entrez Gene	18607857

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]