PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006968t4 | ||||||||
Common Name | TCM_006968 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 284aa MW: 32460.8 Da PI: 5.7079 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58 | 1.7e-18 | 19 | 105 | 4 | 94 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +l+ s+ l+ + l++p kf++++g + s +tl ++sgr W v+l +k ++r+++ +GW+ Fv+ + +g f+vF+++g+s f+ +v Thecc1EG006968t4 19 KLIVSSILQDKKLRIPHKFVKKYGDE--LSSIVTLATPSGRFWLVEL--KKDKRRMWFDSGWNVFVEYYSISVGYFLVFRYEGNSHFNVHV 105 566788889999***********865..7789***************..**************************************6655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.53E-24 | 12 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.4E-25 | 12 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.56E-20 | 14 | 107 | No hit | No description |
PROSITE profile | PS50863 | 14.015 | 16 | 109 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.8E-16 | 17 | 111 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-16 | 20 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2 | 176 | 274 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-7 | 237 | 272 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-8 | 237 | 272 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.69E-8 | 238 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.346 | 239 | 274 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.32E-8 | 239 | 272 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016740 | Molecular Function | transferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MSQPVGPALP EKKPCIFYKL IVSSILQDKK LRIPHKFVKK YGDELSSIVT LATPSGRFWL 60 VELKKDKRRM WFDSGWNVFV EYYSISVGYF LVFRYEGNSH FNVHVYNLAA SEINYLSNGL 120 NNSEELSRDE HVKNIEDGDL AEIMGSCPKC SSSYFLTDKD SDECLDRDRK KYKNSTSGAD 180 LKNLHQKNDM HDLQATFQLT QGKGFQLNVV ELTSTADEGG PYFLNETQQI TKKIKQERWA 240 EFVLDNNLDE GDVCVFELIN TEEIVLKVTI FRVLEDAGPV KKL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 68 | LKKDKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970118.1 | 1e-172 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 | ||||
TrEMBL | A0A061DZJ5 | 0.0 | A0A061DZJ5_THECC; Uncharacterized protein isoform 3 | ||||
STRING | EOX98133 | 1e-173 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 6e-38 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006968t4 |
Entrez Gene | 18607855 |
Publications ? help Back to Top | |||
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