PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006968t3
Common NameTCM_006968
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 284aa    MW: 32460.8 Da    PI: 5.7079
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006968t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-1819105494
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                       +l+ s+ l+ + l++p kf++++g +   s  +tl ++sgr W v+l  +k ++r+++ +GW+ Fv+   + +g f+vF+++g+s f+ +v
  Thecc1EG006968t3  19 KLIVSSILQDKKLRIPHKFVKKYGDE--LSSIVTLATPSGRFWLVEL--KKDKRRMWFDSGWNVFVEYYSISVGYFLVFRYEGNSHFNVHV 105
                       566788889999***********865..7789***************..**************************************6655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-2412107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-2512107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-2014107No hitNo description
PROSITE profilePS5086314.01516109IPR003340B3 DNA binding domain
SMARTSM010194.8E-1617111IPR003340B3 DNA binding domain
PfamPF023625.5E-1620105IPR003340B3 DNA binding domain
SMARTSM010191.2176274IPR003340B3 DNA binding domain
PfamPF023622.3E-7237272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-8237272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-8238275IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.346239274IPR003340B3 DNA binding domain
CDDcd100175.32E-8239272No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSQPVGPALP EKKPCIFYKL IVSSILQDKK LRIPHKFVKK YGDELSSIVT LATPSGRFWL  60
VELKKDKRRM WFDSGWNVFV EYYSISVGYF LVFRYEGNSH FNVHVYNLAA SEINYLSNGL  120
NNSEELSRDE HVKNIEDGDL AEIMGSCPKC SSSYFLTDKD SDECLDRDRK KYKNSTSGAD  180
LKNLHQKNDM HDLQATFQLT QGKGFQLNVV ELTSTADEGG PYFLNETQQI TKKIKQERWA  240
EFVLDNNLDE GDVCVFELIN TEEIVLKVTI FRVLEDAGPV KKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16268LKKDKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017970118.11e-172PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1
TrEMBLA0A061DZJ50.0A0A061DZJ5_THECC; Uncharacterized protein isoform 3
STRINGEOX981331e-173(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-38B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]