PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006965t1 | ||||||||
Common Name | TCM_006965 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 118aa MW: 13375.9 Da PI: 11.0792 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.9 | 1.2e-15 | 4 | 90 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k l s + ++rl++p k ++++ k + +l+++desg W+++l++ +k+ + v+++GW +Fv++++L++gD v ++ + + Thecc1EG006965t1 4 FSKLL--SQTDIRKRLSIPMKSFQSFpRFKAAHALDLQVKDESGVLWQFRLCIrKKNYLKPVFSTGWGKFVQSKNLQVGDKVKLYKEAD 90 55666..55566678********9999555667779***************8745555669*********************9995433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.21E-17 | 2 | 88 | No hit | No description |
PROSITE profile | PS50863 | 9.953 | 2 | 103 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.22E-14 | 3 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-18 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.0E-5 | 4 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-13 | 6 | 95 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MKLFSKLLSQ TDIRKRLSIP MKSFQSFPRF KAAHALDLQV KDESGVLWQF RLCIRKKNYL 60 KPVFSTGWGK FVQSKNLQVG DKVKLYKEAD QASGAQFKIK AKKAVKIFGV VFGYAKA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021286330.1 | 3e-73 | uncharacterized protein LOC110418040 | ||||
TrEMBL | A0A061DZJ0 | 3e-78 | A0A061DZJ0_THECC; Uncharacterized protein | ||||
STRING | EOX98130 | 5e-79 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16093 | 4 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 3e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006965t1 |
Entrez Gene | 18607852 |
Publications ? help Back to Top | |||
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