PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006964t1 | ||||||||
Common Name | TCM_006964 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 127aa MW: 14806.2 Da PI: 7.6666 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36 | 1.3e-11 | 6 | 90 | 3 | 87 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 k lt+ d k rl++p + + +g+ + +l+++d+sg W++++iy ++ + v++kGW eFv a++L+ D v F+ d++ Thecc1EG006964t1 6 KLLTQTDIEK--RLSVPTHILH-LfpflDGD--RFADLQVKDSSGGLWTFRCIYrDGIYAKPVFSKGWLEFVYAKNLQIDDEVAFHKDKD 90 5554444443..5899988884.25976555..6679****************976667779***********************95554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.47E-14 | 2 | 90 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 8.5E-16 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-13 | 3 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-8 | 6 | 90 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MKLFSKLLTQ TDIEKRLSVP THILHLFPFL DGDRFADLQV KDSSGGLWTF RCIYRDGIYA 60 KPVFSKGWLE FVYAKNLQID DEVAFHKDKD IEAAVPYRIE VKRKLMRLMG QDIWIEVEQL 120 HLYGLS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468593.1 | 1e-53 | PREDICTED: uncharacterized protein LOC105786621 | ||||
TrEMBL | A0A061DZD6 | 5e-88 | A0A061DZD6_THECC; Uncharacterized protein | ||||
STRING | EOX98129 | 9e-89 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22060 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 9e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006964t1 |
Entrez Gene | 18607851 |
Publications ? help Back to Top | |||
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