PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006961t1 | ||||||||
Common Name | TCM_006961 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 13877.9 Da PI: 5.6937 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 38.8 | 1.6e-12 | 4 | 102 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEE...E-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFk...ldg 86 f k lt+sdv ks l +p + +++ +++ + + + + d+ g+ W++ + ++++ ++ v++ GW +F + +++++gD+v ++ ld+ Thecc1EG006961t1 4 FSKPLTKSDVEKS--LLIPTHSFNTLPLEEGQFFNMNVVDSAGNAWTFPCFIQQNNDEikgpSVISVGWLKFLHNKDVRVGDTVFLYqisLDD 94 8899*******99..9*******9999999********************7744444446889*********************999655555 PP S.SEE..E CS B3 87 r.sefelv 93 + ++++++ Thecc1EG006961t1 95 NcTGTQFR 102 55555445 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.1E-11 | 3 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.65E-11 | 3 | 107 | No hit | No description |
SuperFamily | SSF101936 | 7.46E-10 | 3 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.5E-10 | 4 | 100 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MTLFSKPLTK SDVEKSLLIP THSFNTLPLE EGQFFNMNVV DSAGNAWTFP CFIQQNNDEI 60 KGPSVISVGW LKFLHNKDVR VGDTVFLYQI SLDDNCTGTQ FRIEVKRKIR LLGQDIWAAV 120 DQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021286332.1 | 5e-80 | B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A061E1C8 | 2e-85 | A0A061E1C8_THECC; Uncharacterized protein | ||||
STRING | EOX98126 | 3e-86 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 2e-07 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006961t1 |
Entrez Gene | 18607848 |
Publications ? help Back to Top | |||
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