PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006958t1 | ||||||||
Common Name | TCM_006958 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 121aa MW: 13510.8 Da PI: 5.7248 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.3 | 1.8e-10 | 4 | 86 | 1 | 84 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k lt+ dv ks lv+p + + ++ gg + + + d +g+ W++ + + ++ +++v+ GW +F ++++++gD+v ++ Thecc1EG006958t1 4 FSKLLTKTDVEKS--LVIPTSSL-DIlplGG---HLFYINVIDNTGKAWTFPCFIqqtEGIESSVVFV-GWLKFLCDKDVRVGDTVFLHQ 86 7788999999988..9******9.5657644...4689***************665544444447877.****************99883 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 1.36E-8 | 2 | 106 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-9 | 2 | 87 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-9 | 2 | 87 | IPR015300 | DNA-binding pseudobarrel domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MKMFSKLLTK TDVEKSLVIP TSSLDILPLG GHLFYINVID NTGKAWTFPC FIQQTEGIES 60 SVVFVGWLKF LCDKDVRVGD TVFLHQKSMD DDCTGTGTQL KIEVKRKIRL LGEDIWAAVE 120 * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021286331.1 | 2e-64 | uncharacterized protein LOC110418041 | ||||
TrEMBL | A0A061E782 | 3e-82 | A0A061E782_THECC; Uncharacterized protein | ||||
STRING | EOX98123 | 6e-83 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 2e-07 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006958t1 |
Entrez Gene | 18607845 |
Publications ? help Back to Top | |||
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