PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006955t1
Common NameTCM_006955
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 94aa    MW: 11129 Da    PI: 10.785
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006955t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.2e-154712690
                      T...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3 26 h...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90
                      h   +++  +s++ +++d+ g++W ++l y+++ g+   vltkGW +Fvk ++L++gD v+F ++++ + 
  Thecc1EG006955t1  4 HfrlDQEGGKSVDFKVTDKYGKVWPFRL-YTRNNGHpkPVLTKGWINFVKKKKLRVGDKVIFFVHEN-GD 71
                      44443333478999**************.644444557************************96554.33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100178.96E-13177No hitNo description
PROSITE profilePS5086311.801181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-15277IPR015300DNA-binding pseudobarrel domain
PfamPF023629.2E-12371IPR003340B3 DNA binding domain
SuperFamilySSF1019363.66E-14972IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MRKHFRLDQE GGKSVDFKVT DKYGKVWPFR LYTRNNGHPK PVLTKGWINF VKKKKLRVGD  60
KVIFFVHENG DQLGIRVQRS IKLLDQEHWA EYM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481135.11e-35PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A061E1C26e-62A0A061E1C2_THECC; Uncharacterized protein
STRINGEOX981211e-62(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17815410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-10auxin response factor 16
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]