PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006946t2
Common NameTCM_006946
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 377aa    MW: 42074.4 Da    PI: 7.4301
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006946t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_124.65.3e-082452911763
                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       A+rsR RK+++i+eLe+ v++L+ae ++   ele l+++   l +e+
  Thecc1EG006946t2 245 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSMEN 291
                       89***********************************9998887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0018234293IPR004827Basic-leucine zipper domain
CDDcd147032.82E-16236284No hitNo description
SuperFamilySSF579597.5E-6245287No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-5245287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MPNSKGSTNI RNLMFAGKHA LLPPKSPFPT VSPTYTDYVP NNVIGSKAVQ KPREGSTHHQ  60
RTSSESLLID EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDVANAPN LDYAVQDEYR  120
YKNMISAPSW ASQDFDYHGH KDARLASFYT DSNLVKQKNR AWDSSLNTVT HPSGLPLREN  180
TILQGLGSSC APQEVEGAPS TASEKQDSAE SSPLDAKASS ERKDNSHAKS SASDSDTKRA  240
KQQFAQRSRV RKLQYIAELE RNVQALQAEG SEVSAELEFL NQQNLILSME NKALKQRLES  300
LAQEQVIKYL EQEVLEREIG RLRLLYQQQQ NQQQQQPSSS HRRSSSRDLD SQFANLSLKH  360
KDASSGHDPV TGSLRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1478882e-84EF147888.1 Populus trichocarpa clone WS0125_L14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971667.10.0PREDICTED: uncharacterized protein At4g06598
SwissprotQ8W3M79e-77Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBLA0A061E7680.0A0A061E768_THECC; Basic-leucine zipper transcription factor family protein isoform 1
STRINGEOX981120.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58110.21e-108bZIP family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]