PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006946t1 | ||||||||
Common Name | TCM_006946 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bZIP | ||||||||
Protein Properties | Length: 377aa MW: 42074.4 Da PI: 7.4301 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 24.6 | 5.3e-08 | 245 | 291 | 17 | 63 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+ae ++ ele l+++ l +e+ Thecc1EG006946t1 245 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSMEN 291 89***********************************9998887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 0.0018 | 234 | 293 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.82E-16 | 236 | 284 | No hit | No description |
SuperFamily | SSF57959 | 7.5E-6 | 245 | 287 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.1E-5 | 245 | 287 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MPNSKGSTNI RNLMFAGKHA LLPPKSPFPT VSPTYTDYVP NNVIGSKAVQ KPREGSTHHQ 60 RTSSESLLID EQPSWLDDLL NEPETPVRRG GHRRSSSDSF AYIDVANAPN LDYAVQDEYR 120 YKNMISAPSW ASQDFDYHGH KDARLASFYT DSNLVKQKNR AWDSSLNTVT HPSGLPLREN 180 TILQGLGSSC APQEVEGAPS TASEKQDSAE SSPLDAKASS ERKDNSHAKS SASDSDTKRA 240 KQQFAQRSRV RKLQYIAELE RNVQALQAEG SEVSAELEFL NQQNLILSME NKALKQRLES 300 LAQEQVIKYL EQEVLEREIG RLRLLYQQQQ NQQQQQPSSS HRRSSSRDLD SQFANLSLKH 360 KDASSGHDPV TGSLRI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147888 | 2e-84 | EF147888.1 Populus trichocarpa clone WS0125_L14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017971667.1 | 0.0 | PREDICTED: uncharacterized protein At4g06598 | ||||
Swissprot | Q8W3M7 | 9e-77 | Y4598_ARATH; Uncharacterized protein At4g06598 | ||||
TrEMBL | A0A061E768 | 0.0 | A0A061E768_THECC; Basic-leucine zipper transcription factor family protein isoform 1 | ||||
STRING | EOX98112 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3360 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G58110.2 | 1e-108 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006946t1 |
Entrez Gene | 18607835 |
Publications ? help Back to Top | |||
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