PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006875t1 | ||||||||
Common Name | TCM_006875 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 140aa MW: 16017.1 Da PI: 8.4593 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.3 | 4.8e-10 | 13 | 56 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ ++ +W+ +a+ +g g+t++++k ++ Thecc1EG006875t1 13 SWTAKQNKLFEKALAKYDKDtpdRWHNVAKAVG-GKTAEEVKRHY 56 7********************************.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.082 | 9 | 64 | IPR017884 | SANT domain |
SMART | SM00717 | 2.5E-9 | 10 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-6 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.79E-8 | 13 | 56 | No hit | No description |
SuperFamily | SSF46689 | 9.79E-13 | 13 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.0E-8 | 13 | 56 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 140 aa Download sequence Send to blast |
MASSSLQSRD SVSWTAKQNK LFEKALAKYD KDTPDRWHNV AKAVGGKTAE EVKRHYEILV 60 EDLKHIESGR VPIPNYRSTG NADEEERYNL HDFVGNFFQS LCNSYHPMIA KLQKVAGAPK 120 ICLKPADWSQ HYPLFCWYQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-34 | 1 | 90 | 1 | 90 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017970206.1 | 4e-58 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 5e-36 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A061E6U2 | 1e-101 | A0A061E6U2_THECC; DnaJ subfamily C member 2 | ||||
STRING | EOX98008 | 1e-102 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-38 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006875t1 |
Entrez Gene | 18607770 |
Publications ? help Back to Top | |||
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