PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006871t4
Common NameTCM_006871
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 320aa    MW: 34899.9 Da    PI: 8.5492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006871t4genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.7e-10181228455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Thecc1EG006871t4 181 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 228
                       8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-17175246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-10175232No hitNo description
Gene3DG3DSA:4.10.280.102.1E-17177245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618177227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7181228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSGDSVLGDM VMTRQLKPDP GLETAWPELV KVDMPGMGFG PCGYGNGPSF DMNYAISRTS  60
SCPPAVAAAV AGEVVEVKGK ESVVSEKIGS AVGRESFKKR KVDKLQNLKV VAEDDSKRIK  120
ACAEEGESKI TGPNTNKSSS NNNNNKKESS TDTSKENSKV SEVQKPDYIH VRARRGQATD  180
SHSLAERVRR EKISERMKYL QDLVPGCNKI TGKAGMLDEI INYVQSLQRQ VEFLSMKLAA  240
VNPRLDFNVE NLFAKEVSPV QHVVSCCGLE MGMNTPDMAP RRTISAPVSI PDASFLDSSC  300
FHIVSVSAIY RYIKLTRLC*
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5322582e-59EU532258.1 Gossypium barbadense clone I8-1 ISSR marker genomic sequence.
GenBankEU5323022e-59EU532302.1 Gossypium barbadense clone I11-4 ISSR marker genomic sequence.
GenBankEU5323092e-59EU532309.1 Gossypium barbadense clone I11-11 ISSR marker genomic sequence.
GenBankEU5323132e-59EU532313.1 Gossypium barbadense clone I11-15 ISSR marker genomic sequence.
GenBankEU5323162e-59EU532316.1 Gossypium barbadense clone I11-19 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042169.20.0PREDICTED: transcription factor bHLH63
SwissprotQ9ZPW38e-57HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A061E6T60.0A0A061E6T6_THECC; Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 4
STRINGEOX980000.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.16e-55cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]