PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006871t4 | ||||||||
Common Name | TCM_006871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 320aa MW: 34899.9 Da PI: 8.5492 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.3 | 3.7e-10 | 181 | 228 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Thecc1EG006871t4 181 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 228 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-17 | 175 | 246 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.87E-10 | 175 | 232 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-17 | 177 | 245 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.618 | 177 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-7 | 181 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 183 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MSGDSVLGDM VMTRQLKPDP GLETAWPELV KVDMPGMGFG PCGYGNGPSF DMNYAISRTS 60 SCPPAVAAAV AGEVVEVKGK ESVVSEKIGS AVGRESFKKR KVDKLQNLKV VAEDDSKRIK 120 ACAEEGESKI TGPNTNKSSS NNNNNKKESS TDTSKENSKV SEVQKPDYIH VRARRGQATD 180 SHSLAERVRR EKISERMKYL QDLVPGCNKI TGKAGMLDEI INYVQSLQRQ VEFLSMKLAA 240 VNPRLDFNVE NLFAKEVSPV QHVVSCCGLE MGMNTPDMAP RRTISAPVSI PDASFLDSSC 300 FHIVSVSAIY RYIKLTRLC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU532258 | 2e-59 | EU532258.1 Gossypium barbadense clone I8-1 ISSR marker genomic sequence. | |||
GenBank | EU532302 | 2e-59 | EU532302.1 Gossypium barbadense clone I11-4 ISSR marker genomic sequence. | |||
GenBank | EU532309 | 2e-59 | EU532309.1 Gossypium barbadense clone I11-11 ISSR marker genomic sequence. | |||
GenBank | EU532313 | 2e-59 | EU532313.1 Gossypium barbadense clone I11-15 ISSR marker genomic sequence. | |||
GenBank | EU532316 | 2e-59 | EU532316.1 Gossypium barbadense clone I11-19 ISSR marker genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007042169.2 | 0.0 | PREDICTED: transcription factor bHLH63 | ||||
Swissprot | Q9ZPW3 | 8e-57 | HBI1_ARATH; Transcription factor HBI1 | ||||
TrEMBL | A0A061E6T6 | 0.0 | A0A061E6T6_THECC; Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 4 | ||||
STRING | EOX98000 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 6e-55 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006871t4 |
Entrez Gene | 18607768 |
Publications ? help Back to Top | |||
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