PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006871t2
Common NameTCM_006871
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 408aa    MW: 44911.9 Da    PI: 7.245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006871t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.3e-10248295455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Thecc1EG006871t2 248 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 295
                       8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.49E-10242299No hitNo description
SuperFamilySSF474595.89E-17242313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618244294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17244312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7248295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MNRALPEMLQ CSDMTVLERQ RARLKWQQEQ LQQQQLQQQE QQQSYFSELS GVFSSQPSHV  60
EGFQGGLMSG DSVLGDMVMT RQLKPDPGLE TAWPELVKVD MPGMGFGPCG YGNGPSFDMN  120
YAISRTSSCP PAVAAAVAGE VVEVKGKESV VSEKIGSAVG RESFKKRKVD KLQNLKVVAE  180
DDSKRIKACA EEGESKITGP NTNKSSSNNN NNKKESSTDT SKENSKVSEV QKPDYIHVRA  240
RRGQATDSHS LAERVRREKI SERMKYLQDL VPGCNKITGK AGMLDEIINY VQSLQRQVEF  300
LSMKLAAVNP RLDFNVENLF AKEVFPSCTT NFPTVGMSSE MANPPYLQVS PVQHVVSCCG  360
LEMGMNTPDM APRRTISAPV SIPDASFLDS SCFPITRCNA ANSTLCNM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5322589e-75EU532258.1 Gossypium barbadense clone I8-1 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042169.20.0PREDICTED: transcription factor bHLH63
TrEMBLA0A061E0X90.0A0A061E0X9_THECC; Cryptochrome-interacting basic-helix-loop-helix 1, putative isoform 2 (Fragment)
STRINGEOX980000.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-59cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]