PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006827t2 | ||||||||
Common Name | TCM_006827 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | TALE | ||||||||
Protein Properties | Length: 681aa MW: 74348.1 Da PI: 6.242 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 2.9e-09 | 421 | 458 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + Thecc1EG006827t2 421 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 458 664459******************************88 PP | |||||||
2 | BELL | 128.1 | 3e-41 | 283 | 354 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kL s+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iSrhFrcL+dai +qi Thecc1EG006827t2 283 ERQELQSKLTKLSSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAINGQI 354 79********************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.0E-65 | 207 | 352 | IPR006563 | POX domain |
Pfam | PF07526 | 1.3E-51 | 213 | 350 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.163 | 399 | 462 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-9 | 402 | 466 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.46E-13 | 402 | 463 | No hit | No description |
SuperFamily | SSF46689 | 2.95E-17 | 403 | 469 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.1E-29 | 405 | 468 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.6E-18 | 419 | 458 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MATYYTGSNN QRDTASMIYL RESMPGSYPE APVLPVNTMM YMNSGSYSDA FAGNSQQQNN 60 CIEIQAVEAS DSTSQHQEIL SNLGGSRVGV HDFGTWRDGR NEMLVMHPMG GPASILHGGQ 120 SLQGQGLSLS LGTQIPSGIQ MPSMPYRNPN SGFASFLSPN QSLTGEGGSR NSSSRDEQSR 180 NAEYLAPGFS GGNQDSNKGD MSAYGMSSIA RTIPNSKYLK AAQQLLDEVV NVRKALKQPD 240 GEKNQSSQDR MKSSTDDDRG SKNVPSNQQE CSNNSPNELS HAERQELQSK LTKLSSMLDE 300 VDRRYKQYYH QMQIVVSSFD VIAGCGAAKP YTALALQTIS RHFRCLRDAI NGQIRVTRKN 360 LGEQDTSENS KGVGISRLRY VDQQLRQQRA LQQLGMMQQH AWRPQRGLPE SSVSILRAWL 420 FEHFLHPYPK DSDKIMLARQ TGLTRSQVSN WFINARVRLW KPMVEEMYKE EFADAEMDSN 480 SSSENAVKAT KGDTGTSEDR GEDLQQSGSS SATERCSTGQ LMDSKSDHVS DVEMAVPSTG 540 AGFQNVTRGE TETEYGLLKL REEQRPNVDD SNLLPDAIAH SGGGNDRFMA AAAAAYHMSE 600 LGRFGSGSGV SLTLGLQHCE GGSIPMSGGS HQSFVAVRGD GIYNPAASSV GAETADFECI 660 NPGNRQHRFS SSHLLHDFVA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 8e-17 | 408 | 465 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 8e-17 | 408 | 465 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007042091.2 | 0.0 | PREDICTED: BEL1-like homeodomain protein 6 | ||||
Refseq | XP_017971393.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 6 | ||||
TrEMBL | A0A061DZU5 | 0.0 | A0A061DZU5_THECC; BEL1-like homeodomain protein 6 isoform 1 | ||||
STRING | EOX97922 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34610.2 | 1e-137 | BEL1-like homeodomain 6 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006827t2 |
Entrez Gene | 18607727 |
Publications ? help Back to Top | |||
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