PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006816t1 | ||||||||
Common Name | TCM_006816 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | SRS | ||||||||
Protein Properties | Length: 212aa MW: 23348.4 Da PI: 8.9855 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 182.3 | 2e-56 | 12 | 144 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 g+++CqdCGnqakkdCa++RCRtCC+s+gf+C+th+kstWvpa++rr+r+qql++ +++ + +++kr re + s Thecc1EG006816t1 12 GGTRCQDCGNQAKKDCAYMRCRTCCRSKGFECQTHIKSTWVPAYRRRQRHQQLSSVPQQR--HLPIHNPKRLRE----------------NPS 86 7789*********************************************99998874433..233333444443................233 PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + le ++P+ev s+a frcvrvss+dd+ +++aYqt v+igGhvfkGiLydqG++e Thecc1EG006816t1 87 LTGLELGNFPAEVTSPATFRCVRVSSIDDAADQYAYQTIVNIGGHVFKGILYDQGPAE 144 34567788***********************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.4E-58 | 13 | 143 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 2.6E-27 | 16 | 57 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 9.4E-28 | 95 | 142 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MMMMMRQGGG FGGTRCQDCG NQAKKDCAYM RCRTCCRSKG FECQTHIKST WVPAYRRRQR 60 HQQLSSVPQQ RHLPIHNPKR LRENPSLTGL ELGNFPAEVT SPATFRCVRV SSIDDAADQY 120 AYQTIVNIGG HVFKGILYDQ GPAEGHHHTV GECSSRETQQ PNQINAAALT TATTTTSTTS 180 VAAETLLPFA YASPFNAFMS AGTQFFLHPK S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007042072.2 | 1e-151 | PREDICTED: protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9SD40 | 2e-65 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A061E6J8 | 1e-158 | A0A061E6J8_THECC; Lateral root primordium protein-related | ||||
STRING | EOX97903 | 1e-159 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9188 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 1e-59 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006816t1 |
Entrez Gene | 18607716 |
Publications ? help Back to Top | |||
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