PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006809t2
Common NameTCM_006809
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family DBB
Protein Properties Length: 233aa    MW: 25899.1 Da    PI: 6.2934
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006809t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box248.3e-08542637
          zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      C+ +++ e+  fC  ++  lCe+C    H+       H
  Thecc1EG006809t2  5 CDVCDKDEAVVFCSADEAALCESCDRRVHHAnklarkH 42
                      ******99******************996443666666 PP
2zf-B_box24.55.5e-085492238
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                      e + C+ ++  ++ lfC++++  lC++C l +H+   Ht
  Thecc1EG006809t2 54 ESPLCDICQVRRAFLFCQEDRAILCRECDLPIHRTneHT 92
                      6789*****999*********************778865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.035147IPR000315B-box-type zinc finger
SMARTSM003361.7E-8447IPR000315B-box-type zinc finger
PfamPF006431.5E-5543IPR000315B-box-type zinc finger
CDDcd000211.81E-5547No hitNo description
PROSITE profilePS5011910.25353100IPR000315B-box-type zinc finger
SMARTSM003361.4E-1353100IPR000315B-box-type zinc finger
PfamPF006438.6E-75492IPR000315B-box-type zinc finger
CDDcd000214.87E-856100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MKIWCDVCDK DEAVVFCSAD EAALCESCDR RVHHANKLAR KHSRFSLLHP TFKESPLCDI  60
CQVRRAFLFC QEDRAILCRE CDLPIHRTNE HTQKHNRFLL TGVKLSSSSS SPCLNPTSSS  120
SNGHNATTID SETKSSQSCK RFRSVSNNEI FSSPSIEKPL PSTTDKVEDN CTSDTVSIST  180
SSISEYLMET LPGWRVDDFL EPSSAANGFC KTFEQFLPVK GGDCVNLELF SI*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042065.21e-168PREDICTED: B-box zinc finger protein 20 isoform X1
SwissprotQ0IGM71e-67BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A061E0N01e-169A0A061E0N0_THECC; B-box zinc finger family protein, putative isoform 2
STRINGEOX978951e-139(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.12e-63DBB family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  3. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]