PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006809t1 | ||||||||
Common Name | TCM_006809 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | DBB | ||||||||
Protein Properties | Length: 276aa MW: 30741.6 Da PI: 6.8856 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.6 | 1.1e-07 | 5 | 42 | 6 | 37 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......H 37 C+ +++ e+ fC ++ lCe+C H+ H Thecc1EG006809t1 5 CDVCDKDEAVVFCSADEAALCESCDRRVHHAnklarkH 42 ******99******************996443666666 PP | |||||||
2 | zf-B_box | 24.2 | 7.2e-08 | 54 | 92 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 e + C+ ++ ++ lfC++++ lC++C l +H+ Ht Thecc1EG006809t1 54 ESPLCDICQVRRAFLFCQEDRAILCRECDLPIHRTneHT 92 6789*****999*********************778865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 11.035 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.7E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.12E-6 | 5 | 47 | No hit | No description |
Pfam | PF00643 | 2.0E-5 | 5 | 43 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.253 | 53 | 100 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.4E-13 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-6 | 54 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.89E-8 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:1900458 | Biological Process | negative regulation of brassinosteroid mediated signaling pathway | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MKIWCDVCDK DEAVVFCSAD EAALCESCDR RVHHANKLAR KHSRFSLLHP TFKESPLCDI 60 CQVRRAFLFC QEDRAILCRE CDLPIHRTNE HTQKHNRFLL TGVKLSSSSS SPCLNPTSSS 120 SNGHNATTID SETKSSQSCK RFRSVSNNEI FSSPSIEKPL PSTTDKVEDN CTSDTVSIST 180 SSISEYLMET LPGWRVDDFL EPSSAANGFS VWLPQVSPPQ SPQLCFLIPQ NDLVDGFKEL 240 KEANVLNFGC RWNGESLIVP QISSSSSLKK SRLFR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021286028.1 | 1e-163 | B-box zinc finger protein 20-like | ||||
Swissprot | Q0IGM7 | 5e-67 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
TrEMBL | A0A061DYV0 | 0.0 | A0A061DYV0_THECC; B-box zinc finger family protein, putative isoform 1 | ||||
STRING | EOX97895 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6597 | 27 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 1e-62 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006809t1 |
Entrez Gene | 18607710 |
Publications ? help Back to Top | |||
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