PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006795t1
Common NameTCM_006795
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 323aa    MW: 35506.5 Da    PI: 5.4704
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006795t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.9e-18241274134
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                       Cs+C++ kTp+WR gp g ktLCnaCG++y++ +
  Thecc1EG006795t1 241 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 274
                       *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.1E-815319IPR016679Transcription factor, GATA, plant
SMARTSM004012.7E-14235289IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-14237298No hitNo description
PROSITE profilePS5011411.332239271IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14239272IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.58E-14240297No hitNo description
PfamPF003204.0E-16241274IPR000679Zinc finger, GATA-type
PROSITE patternPS003440241266IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEYCMEARAL KSSVRGELAM QRTQHAALDD ILYMNGAAPG EDFSVDCFLN FNNGEFEEEE  60
QKDSFSVSSE ERVADDDSNS NSSSFSFDSL LTNELSVPDD EIAGLEWVSH FVDDSFPELP  120
ILCPVFKPQS DGHAKTLFET EPELVFMKTP SFSSTVPSKA RSKRAKSTGR TWSVGSMPLS  180
ESSSSTITSS STSSGFSVTS ANVQETDLAN DFTEPPTKKQ KKKPAVQASG LSSGNPFQRR  240
CSHCQVQKTP QWRTGPLGAK TLCNACGVRY KSGRLFPEYR PACSPTFSGD IHSNSHRKVL  300
EMRKRKEVAG QEPELTRMIP SF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007042041.10.0PREDICTED: GATA transcription factor 5
TrEMBLA0A061DZP30.0A0A061DZP3_THECC; GATA transcription factor
STRINGEOX978720.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-53GATA transcription factor 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]