PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006795t1 | ||||||||
Common Name | TCM_006795 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | GATA | ||||||||
Protein Properties | Length: 323aa MW: 35506.5 Da PI: 5.4704 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.9 | 2.9e-18 | 241 | 274 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+C++ kTp+WR gp g ktLCnaCG++y++ + Thecc1EG006795t1 241 CSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGR 274 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.1E-81 | 5 | 319 | IPR016679 | Transcription factor, GATA, plant |
SMART | SM00401 | 2.7E-14 | 235 | 289 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.6E-14 | 237 | 298 | No hit | No description |
PROSITE profile | PS50114 | 11.332 | 239 | 271 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.6E-14 | 239 | 272 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.58E-14 | 240 | 297 | No hit | No description |
Pfam | PF00320 | 4.0E-16 | 241 | 274 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 241 | 266 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MEYCMEARAL KSSVRGELAM QRTQHAALDD ILYMNGAAPG EDFSVDCFLN FNNGEFEEEE 60 QKDSFSVSSE ERVADDDSNS NSSSFSFDSL LTNELSVPDD EIAGLEWVSH FVDDSFPELP 120 ILCPVFKPQS DGHAKTLFET EPELVFMKTP SFSSTVPSKA RSKRAKSTGR TWSVGSMPLS 180 ESSSSTITSS STSSGFSVTS ANVQETDLAN DFTEPPTKKQ KKKPAVQASG LSSGNPFQRR 240 CSHCQVQKTP QWRTGPLGAK TLCNACGVRY KSGRLFPEYR PACSPTFSGD IHSNSHRKVL 300 EMRKRKEVAG QEPELTRMIP SF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007042041.1 | 0.0 | PREDICTED: GATA transcription factor 5 | ||||
TrEMBL | A0A061DZP3 | 0.0 | A0A061DZP3_THECC; GATA transcription factor | ||||
STRING | EOX97872 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5739 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 4e-53 | GATA transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006795t1 |
Entrez Gene | 18607699 |
Publications ? help Back to Top | |||
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