PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006767t3
Common NameTCM_006767
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family BBR-BPC
Protein Properties Length: 286aa    MW: 31835.4 Da    PI: 10.0231
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006767t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind352.49.7e-1081028516301
         GAGA_bind  16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksi 108
                       ++++l   +++++ms++aerda+irern+a+sekk+a+a+rd+a++qrdkalaer+ al++rdn+l+ l+++en++  + p g ++ +g k +
  Thecc1EG006767t3  10 QNNALV--MNKKIMSILAERDAAIRERNIAISEKKEALAARDEALQQRDKALAERDSALMDRDNALAVLQYRENAM--NFPLGGGIQRGGKRM 98 
                       335566..99****************************************************************95..568899999****99 PP

         GAGA_bind 109 dslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngv 201
                       +   + + ++++++     e++ ++alp+++ a e+ +++ +k+++++k   +k a+k+kk  e+ +++  +e   ++ k+e++ +d++ln v
  Thecc1EG006767t3  99 HP--TYHSTDVGETLNS--EMHVTDALPVSTIACEEGKSRPVKRTKENKAVSSKSARKVKKVAEDLNRQAGTEV--KKCKSEWNGQDIGLNMV 185
                       94..4456677776655..9***********************99999999999999****9999999999998..57*************** PP

         GAGA_bind 202 slDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGt 294
                       ++De+t+PvPvCsCtG++rqCYkWGnGGWqS+CCttt+S yPLP+++++r+aR++grKmS+++f+klL++LaaeG dls p+DLk++WA+HGt
  Thecc1EG006767t3 186 NFDETTMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTTMSSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGQDLSIPLDLKNYWARHGT 278
                       ********************************************************************************************* PP

         GAGA_bind 295 nkfvtir 301
                       n+++ti+
  Thecc1EG006767t3 279 NRYITIK 285
                       ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.2E-1401285IPR010409GAGA-binding transcriptional activator
PfamPF062171.9E-987285IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MMPQHHMKEQ NNALVMNKKI MSILAERDAA IRERNIAISE KKEALAARDE ALQQRDKALA  60
ERDSALMDRD NALAVLQYRE NAMNFPLGGG IQRGGKRMHP TYHSTDVGET LNSEMHVTDA  120
LPVSTIACEE GKSRPVKRTK ENKAVSSKSA RKVKKVAEDL NRQAGTEVKK CKSEWNGQDI  180
GLNMVNFDET TMPVPVCSCT GVPRQCYKWG NGGWQSSCCT TTMSSYPLPQ MPNKRHARVG  240
GRKMSGSVFT KLLSRLAAEG QDLSIPLDLK NYWARHGTNR YITIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021286691.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_021286692.10.0protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-131BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A061DZM00.0A0A061DZM0_THECC; GAGA-motif binding transcriptional activator isoform 3
STRINGEOX978430.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-128basic pentacysteine 4
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]