PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG006766t3
Common NameTCM_006766
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 517aa    MW: 55464.2 Da    PI: 8.1262
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG006766t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.54.4e-11433480552
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                       kr++r   NR +A rs +RK  +i eLe kv++L++e ++L  +l  l
  Thecc1EG006766t3 433 KRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLL 480
                       9****************************************9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.8E-13429493IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.059431487IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.88E-12433488No hitNo description
PfamPF001704.3E-10433480IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-12433487No hitNo description
CDDcd147038.57E-25434481No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MGDSEEGNTD VMQRIQSSFG TSSSSIPKQP LSMNQLEIPQ LNPNQIRAPR HFSHFGQNFN  60
GGVGDAANKR VGIPPSHPNQ IPPISPYSQI PVSRQMNQQM GSQSFSPGPT HSRSLSQPSS  120
FFSLDSLPPL SPSPFRDCSS VAVPDQICTD VSMEDRDAAS HSLLPPSPFS RGNSPRVGES  180
LPPRKSHRRS NSDIPFGFNT IMQSSPPLIP LRGSGGLERS VSGKENSGVP KPAQLVKKET  240
SWERGADGNA EGMGERKSEG EVVDDLFSAY MNLDNIDALN SSGTDDKNNG TENHEDLDSR  300
ASGTKTNGGD SSDNEAESSV NESGNSALRG GMNSTDKREG IKRSAGGDIA PTGRHYRSVS  360
MDSFMGKLNF GDESPKLPPS PGTRPGQLSP SNSIDGNSAA FSLEFGNGEF SGAELKKIMA  420
NEKLAEIAMS DPKRAKRILA NRQSAARSKE RKMRYISELE HKVQTLQTEA TTLSAQLTLL  480
QPSLTFLISS SSSSCRHSPN SRMGTQLQKR SRISSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971734.10.0PREDICTED: transcription factor RF2a
TrEMBLA0A061DYJ10.0A0A061DYJ1_THECC; Basic-leucine zipper transcription factor family protein isoform 3
STRINGEOX978370.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-130bZIP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]