PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006625t4 | ||||||||
Common Name | TCM_006625 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bZIP | ||||||||
Protein Properties | Length: 267aa MW: 28956.3 Da PI: 6.4134 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 23.2 | 1.5e-07 | 85 | 134 | 2 | 51 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +e k +r NReA r++R++ ka+ + Le++v L a N++L k+l+ Thecc1EG006625t4 85 REKKSKKRPLGNREAVRKYREKVKARAASLEDEVVRLRALNQQLLKRLQG 134 5678899999***********************************99974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.0E-12 | 82 | 152 | No hit | No description |
SMART | SM00338 | 6.6E-8 | 84 | 151 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 3.5E-13 | 86 | 141 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.66E-5 | 88 | 134 | No hit | No description |
CDD | cd14686 | 2.39E-10 | 90 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071294 | Biological Process | cellular response to zinc ion | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MDDGELDFLN QEVFSGNMAD IPSSCSMDSF FDELLNDSHA CTHTHTCNPP GPDNSHTHTC 60 FHVHTKIVPA PTEDKAAIDD TAESREKKSK KRPLGNREAV RKYREKVKAR AASLEDEVVR 120 LRALNQQLLK RLQGQAALEA EIARLKCLLV DIRGRIEGEI GSFPYQKSTT NVNMMNLPGA 180 YVMNPCNVQC NDQMYCLHPG ADGKTGEVAE LNGQGFNVCE FDNLPCLANQ NSGEKELSTY 240 GVGSAGSNGN SSGTKRRKGA HAATAG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007041832.2 | 0.0 | PREDICTED: basic leucine zipper 23 | ||||
Refseq | XP_017971400.1 | 0.0 | PREDICTED: basic leucine zipper 23 | ||||
Swissprot | Q8GTS2 | 1e-111 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A061DZ79 | 0.0 | A0A061DZ79_THECC; Basic-leucine zipper transcription factor family protein isoform 1 | ||||
STRING | EOX97658 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 1e-110 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006625t4 |
Entrez Gene | 18607547 |
Publications ? help Back to Top | |||
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