PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006625t3

Common Name

TCM_006625

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 282aa MW: 30843.7 Da PI: 6.3049

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006625t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.1	1.6e-07	85	134	2	51
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +e k +r NReA r++R++ ka+ + Le++v L a N++L k+l+ Thecc1EG006625t3 85 REKKSKKRPLGNREAVRKYREKVKARAASLEDEVVRLRALNQQLLKRLQG 134 5678899999***********************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.3E-12	82	152	No hit	No description
SMART	SM00338	6.6E-8	84	151	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.9E-13	86	141	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.85E-5	88	134	No hit	No description
CDD	cd14686	1.13E-10	90	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDDGELDFLN QEVFSGNMAD IPSSCSMDSF FDELLNDSHA CTHTHTCNPP GPDNSHTHTC 60 FHVHTKIVPA PTEDKAAIDD TAESREKKSK KRPLGNREAV RKYREKVKAR AASLEDEVVR 120 LRALNQQLLK RLQGQAALEA EIARLKCLLV DIRGRIEGEI GSFPYQKSTT NVNMMNLPGA 180 YVMNPCNVQC NDQMYCLHPG ADGKTGEVAE LNGQGFNVCE FDNLPCLANQ NSGEKELSTY 240 GVGSAGSNGN SSGTKRRKGV AWLGFDAISG LLSLWFKAYN L*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021286148.1	0.0	basic leucine zipper 23-like isoform X2
Swissprot	Q8GTS2	1e-111	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A061DY61	0.0	A0A061DY61_THECC; Basic-leucine zipper transcription factor family protein isoform 3
STRING	EOX97658	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-110	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG006625t3
Entrez Gene	18607547

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]