PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006453t1 | ||||||||
Common Name | TCM_006453 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Nin-like | ||||||||
Protein Properties | Length: 953aa MW: 104513 Da PI: 6.3382 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.4 | 7.1e-29 | 632 | 682 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Thecc1EG006453t1 632 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 682 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55781 | 1.57E-5 | 392 | 488 | IPR029016 | GAF domain-like |
Gene3D | G3DSA:3.30.450.40 | 2.0E-4 | 393 | 490 | IPR029016 | GAF domain-like |
PROSITE profile | PS51519 | 17.359 | 621 | 702 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.0E-24 | 634 | 682 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 4.66E-25 | 847 | 940 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.5E-24 | 852 | 936 | No hit | No description |
PROSITE profile | PS51745 | 28.685 | 854 | 937 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.7E-28 | 854 | 937 | IPR000270 | PB1 domain |
CDD | cd06407 | 2.24E-45 | 855 | 936 | No hit | No description |
Pfam | PF00564 | 1.1E-18 | 855 | 936 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 953 aa Download sequence Send to blast |
MDGDGGFTPN STFGNLSDAA MDLDFMDELL FEGCWLETSD GFNFTEPGPS SSSGPNDPSQ 60 CLPVSGSSTV PFTINSHPMH QGETERNVPP PPLPKIEDLS KSQSQNWAAA GTATSLSQPG 120 SFIVEGTELG SRWWIGPRAE SGSSSSVKER LMEAIGYLKE CTKDRDVLIQ IWVPVKREGK 180 HVLTTEGQPY SLNTNCKSLE IFRDVSKSYN FPAEEDSKES VGLPGRVYLG KLPEWTPDVR 240 FFRSDEYPRI NFAHKYNVGG SLALPVFERG SGTCLGVVEI VTTTQKINYR PELEHVCKAL 300 EAVDLRSSHN FSPPSVEGYN ELYQAALPEI VEVLRSVCKT YKLPLALTWA ACVNQRKSGC 360 RHSDENFYHC VSTVDAACLA DEGFWDFLEA CSEHHLFRGQ GIVGRAFTTN KQCFVTDITA 420 FSKTNYPLSH HARMFGLRGA VAIPLQSIFS GSVEFVLELF LPKDCHDSEE QKQMLNSLSS 480 FMRQACQSLH VVVDKELEEE VILPVKEMVV ASDGKSDKEE TQFRISCLKE NSPEESSWIA 540 HMMEAQQKGK GVSVSWEYQK EEPKEEFRVT THWEDTQLEL YNKQVLSDFG QLHQNAGTKT 600 SVEGGGGDSS SSGGHRLLAG KKAGGKRRTK MEKTISLQVL RQYFAGSLKD AAKSIGVCPT 660 TLKRICRQHG ITRWPSRKIK KVGHSLKKLQ LVIDSVQGAE GAIQIGSFYS SFPELSSPNF 720 SGNGPSSSLK ISNHSKPSET QLESGMFSQG AAAPKSPSSS GSQSSGSSTC CSTGAKQHST 780 SINALGSADG LTVEDPGGAL KRALSDVELH ALNQEEPKLL ARSQSHKTFG EHSSFETLPP 840 LPRSGGQNLR PGGAIRVKAT FGEVKIRFSL QPSWGFRDLQ QEIAKRFNRE DFSKIDLKYL 900 DDDNEWVLLT CDADLEECID IYKSSQTHTI KISLHPASHP NLGSSVGSTA PL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007041613.2 | 0.0 | PREDICTED: protein NLP2 | ||||
Refseq | XP_017971585.1 | 0.0 | PREDICTED: protein NLP2 | ||||
Refseq | XP_017971586.1 | 0.0 | PREDICTED: protein NLP2 | ||||
Swissprot | Q7X9B9 | 0.0 | NLP2_ARATH; Protein NLP2 | ||||
TrEMBL | A0A061DXA4 | 0.0 | A0A061DXA4_THECC; Plant regulator RWP-RK family protein, putative isoform 1 | ||||
STRING | EOX97444 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1998 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006453t1 |
Entrez Gene | 18607397 |
Publications ? help Back to Top | |||
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