PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006432t2 | ||||||||
Common Name | TCM_006432 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bZIP | ||||||||
Protein Properties | Length: 353aa MW: 38829.4 Da PI: 9.0649 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43 | 9.8e-14 | 271 | 327 | 4 | 60 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +++rr++kNRe+A rsR+RK+a++ eLe v +Le+e ++L e el+ke k Thecc1EG006432t2 271 QQKQRRMIKNRESAARSRERKQAYTVELESLVTQLEEEQTRLLREEAELQKERFKQL 327 689**************************************9888878877765544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-13 | 265 | 327 | No hit | No description |
SMART | SM00338 | 2.5E-12 | 268 | 332 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.1E-12 | 270 | 329 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.392 | 270 | 322 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.75E-10 | 272 | 324 | No hit | No description |
CDD | cd14707 | 5.45E-19 | 272 | 321 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 275 | 290 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
TVGQRLCSSA VAFRFSNNFP SVFEFYLILS FSNQSAESQK GKEREREEIV SKKLVRERKN 60 PENSGGVMAS SKVITTTSAT NPDVPRQPSL CSSLSTLLAD LQNQQSNQSQ SQNGSMSMDD 120 LLKNIYSSPP PPPTTSEAHA QFPGASISRE GSFSLPKDVA NKSVDEVWKE IVAGGGDQRQ 180 GGPTEEMTLE DFLTKAGAVR EEDVRGVVNQ VGVGAGVYAV DPAVINGGGS QFSTFGNNGG 240 VDHQRLVAPA GGGARGKRRA VEEPPLDKAT QQKQRRMIKN RESAARSRER KQAYTVELES 300 LVTQLEEEQT RLLREEAELQ KERFKQLMEN LIPVEEKRRP PRVLRRVHSM QW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007041584.2 | 0.0 | PREDICTED: G-box-binding factor 4 | ||||
Swissprot | P42777 | 2e-42 | GBF4_ARATH; G-box-binding factor 4 | ||||
TrEMBL | A0A061DXI2 | 0.0 | A0A061DXI2_THECC; Basic-leucine zipper transcription factor family protein, putative isoform 2 (Fragment) | ||||
STRING | EOX97415 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16538 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44080.1 | 6e-31 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006432t2 |
Entrez Gene | 18607377 |
Publications ? help Back to Top | |||
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