PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006426t2

Common Name

TCM_006426

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 520aa MW: 58002.9 Da PI: 4.8332

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006426t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	3e-30	249	308	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ Thecc1EG006426t2 249 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 308 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-32	234	310	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-27	242	310	IPR003657	WRKY domain
PROSITE profile	PS50811	28.988	244	310	IPR003657	WRKY domain
SMART	SM00774	3.2E-37	249	309	IPR003657	WRKY domain
Pfam	PF03106	4.1E-27	250	308	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MGREERRMEI DLSLKIDAKE EEEEEEEEEE EEVEEEEKDV EEAKETMEED DNQDREVMTA 60 IAATGEVEVG APLEFSLQEN MKTEEMEMSR MKEENKVLRK VVEKTMQDYY DLQMKFAAIQ 120 QNNQKKDPQI FLSLSGNENS SQEQQANPRT SNVNNQKQGS PSQDDNDEEN ELGLSLRLQT 180 ISSQREIRQG DQKEDQRKEL ESQEITSNVA SVQNKLDQSH LSAITSHAAS PPNRKARVSV 240 RARCQTATMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILITT 300 YEGTHNHPLP VGATAMASTA SAAAASFMLL DSSNPLSNGI PNITQATLPY QNPHLINSVN 360 PSNNVRNMTL NDPSKGIVLD LTNNHHFDHH QLPITASSSS HSSAHQQAFP WMPSRLNYHN 420 ANPLPSNAFA TSRTNEREWK SDEDKSLAEN VTAIASDPKF RVAVAAAITS LINKESQNTH 480 RIPIASSFVG REGERGSSST NNWVLESLSG TGKPIQHSP*

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MGREERRMEI DLSLKIDAKE EEEEEEEEEE EEVEEEEKDV EEAKETMEED DNQDREVMTA  60
IAATGEVEVG APLEFSLQEN MKTEEMEMSR MKEENKVLRK VVEKTMQDYY DLQMKFAAIQ  120
QNNQKKDPQI FLSLSGNENS SQEQQANPRT SNVNNQKQGS PSQDDNDEEN ELGLSLRLQT  180
ISSQREIRQG DQKEDQRKEL ESQEITSNVA SVQNKLDQSH LSAITSHAAS PPNRKARVSV  240
RARCQTATMN DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPG CPVRKQVQRC LEDMSILITT  300
YEGTHNHPLP VGATAMASTA SAAAASFMLL DSSNPLSNGI PNITQATLPY QNPHLINSVN  360
PSNNVRNMTL NDPSKGIVLD LTNNHHFDHH QLPITASSSS HSSAHQQAFP WMPSRLNYHN  420
ANPLPSNAFA TSRTNEREWK SDEDKSLAEN VTAIASDPKF RVAVAAAITS LINKESQNTH  480
RIPIASSFVG REGERGSSST NNWVLESLSG TGKPIQHSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-22	236	312	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by potassium deprivation. {ECO:0000269\|PubMed:15173595}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669830	1e-139	KF669830.1 Gossypium hirsutum WRKY transcription factor 81 (WRKY81) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007041570.2	0.0	PREDICTED: probable WRKY transcription factor 9 isoform X2
Swissprot	Q9C9F0	2e-82	WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBL	A0A061DZ88	0.0	A0A061DZ88_THECC; WRKY DNA-binding protein 9, putative isoform 2
STRING	EOX97400	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	8e-77	WRKY DNA-binding protein 9

Link Out ? help Back to Top
Phytozome	Thecc1EG006426t2
Entrez Gene	18607371

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]