PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006426t1

Common Name

TCM_006426

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

WRKY

Protein Properties

Length: 525aa MW: 58543.6 Da PI: 4.8332

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006426t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	3e-30	254	313	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ Thecc1EG006426t1 254 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 313 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-32	239	315	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-27	247	315	IPR003657	WRKY domain
PROSITE profile	PS50811	28.988	249	315	IPR003657	WRKY domain
SMART	SM00774	3.2E-37	254	314	IPR003657	WRKY domain
Pfam	PF03106	4.2E-27	255	313	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MGREERRMEI DLSLKIDAKE EEEEEEEEEE EEVEEEEKDV EEAKETMEED DNQDREVMTA 60 IAATGEVEVG APLEFSLQEN MKTEELSVLQ MEMSRMKEEN KVLRKVVEKT MQDYYDLQMK 120 FAAIQQNNQK KDPQIFLSLS GNENSSQEQQ ANPRTSNVNN QKQGSPSQDD NDEENELGLS 180 LRLQTISSQR EIRQGDQKED QRKELESQEI TSNVASVQNK LDQSHLSAIT SHAASPPNRK 240 ARVSVRARCQ TATMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS 300 ILITTYEGTH NHPLPVGATA MASTASAAAA SFMLLDSSNP LSNGIPNITQ ATLPYQNPHL 360 INSVNPSNNV RNMTLNDPSK GIVLDLTNNH HFDHHQLPIT ASSSSHSSAH QQAFPWMPSR 420 LNYHNANPLP SNAFATSRTN EREWKSDEDK SLAENVTAIA SDPKFRVAVA AAITSLINKE 480 SQNTHRIPIA SSFVGREGER GSSSTNNWVL ESLSGTGKPI QHSP*

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MGREERRMEI DLSLKIDAKE EEEEEEEEEE EEVEEEEKDV EEAKETMEED DNQDREVMTA  60
IAATGEVEVG APLEFSLQEN MKTEELSVLQ MEMSRMKEEN KVLRKVVEKT MQDYYDLQMK  120
FAAIQQNNQK KDPQIFLSLS GNENSSQEQQ ANPRTSNVNN QKQGSPSQDD NDEENELGLS  180
LRLQTISSQR EIRQGDQKED QRKELESQEI TSNVASVQNK LDQSHLSAIT SHAASPPNRK  240
ARVSVRARCQ TATMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS  300
ILITTYEGTH NHPLPVGATA MASTASAAAA SFMLLDSSNP LSNGIPNITQ ATLPYQNPHL  360
INSVNPSNNV RNMTLNDPSK GIVLDLTNNH HFDHHQLPIT ASSSSHSSAH QQAFPWMPSR  420
LNYHNANPLP SNAFATSRTN EREWKSDEDK SLAENVTAIA SDPKFRVAVA AAITSLINKE  480
SQNTHRIPIA SSFVGREGER GSSSTNNWVL ESLSGTGKPI QHSP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-22	241	317	1	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by potassium deprivation. {ECO:0000269\|PubMed:15173595}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF669830	1e-139	KF669830.1 Gossypium hirsutum WRKY transcription factor 81 (WRKY81) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970253.1	0.0	PREDICTED: probable WRKY transcription factor 9 isoform X1
Swissprot	Q9C9F0	9e-84	WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBL	A0A061DXG8	0.0	A0A061DXG8_THECC; WRKY DNA-binding protein 9, putative isoform 1
STRING	EOX97400	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6736	27	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	5e-78	WRKY DNA-binding protein 9

Link Out ? help Back to Top
Phytozome	Thecc1EG006426t1
Entrez Gene	18607371

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]