PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG006415t1

Common Name

TCM_006415

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GATA

Protein Properties

Length: 239aa MW: 26423.9 Da PI: 7.9429

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG006415t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	36.6	6.3e-12	5	31	7	33
GATA 7 tkTplWRrgpdgnktLCnaCGlyyrkk 33 t TplWR+gp ++ LCnaCG +yr+ Thecc1EG006415t1 5 TGTPLWRNGPPEKPVLCNACGSRYRLG 31 67******88888********86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	7.13E-7	4	41	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.2E-8	5	31	IPR013088	Zinc finger, NHR/GATA-type
SMART	SM00401	0.0076	5	55	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	1.2E-9	5	31	IPR000679	Zinc finger, GATA-type
CDD	cd00202	1.14E-9	7	52	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MIDFTGTPLW RNGPPEKPVL CNACGSRYRL GKPLENYTPK SVIVLRKKKR RRAVPKAMVT 60 QQNTIVASSA GYASNLQRYA SSESSTSHDQ NLLHMNQQNG AEIPVENWES LWGSQVPSRS 120 RSPVLYSRVT SIKKLQMDLH NILRDEGPFI ASEGPEDVLI YNDNINKLQI PSTEIGLGSI 180 LLKFPATDCQ EQEIEPASSS TCGKPSALND VQIASPSLNM IEELQRQWGQ PTADQSFV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	51	RKKKRRR
2	46	51	KKKRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017970630.1	1e-110	PREDICTED: GATA transcription factor 26
TrEMBL	A0A061DZ60	1e-176	A0A061DZ60_THECC; GATA transcription factor 26-like protein
STRING	EOX97371	1e-177	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18902	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	4e-24	GATA transcription factor 26

Link Out ? help Back to Top
Phytozome	Thecc1EG006415t1
Entrez Gene	18607360

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]