PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006270t1 | ||||||||
Common Name | TCM_006270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 109aa MW: 12245.9 Da PI: 9.6305 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.6 | 3.8e-12 | 14 | 101 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkvfrk 99 ++l++ k+f e + + + +++++de g W++k++++ + + vl++ W +Fv+ n +++gD+v + + ++ + +e++v v+r+ Thecc1EG006270t1 14 KQLTITKNFDGEPFPSAAHGGKMRVRDEPGALWTFKYKVKSTNE-RVLSGHWMQFVQNNSVRVGDTVAIDKNdgWSsEAAEYKVEVIRR 101 5677777775555333445568***************6544444.689*******************9983324555777777777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.659 | 1 | 102 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.87E-11 | 7 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.7E-11 | 13 | 84 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.8E-9 | 14 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.04E-10 | 14 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MAIVSKMIVE GDMKQLTITK NFDGEPFPSA AHGGKMRVRD EPGALWTFKY KVKSTNERVL 60 SGHWMQFVQN NSVRVGDTVA IDKNDGWSSE AAEYKVEVIR RVQNRSDQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A061E4M6 | 8e-75 | A0A061E4M6_THECC; Uncharacterized protein | ||||
STRING | EOX97178 | 1e-75 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-06 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006270t1 |
Entrez Gene | 18607234 |
Publications ? help Back to Top | |||
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