PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006269t1 | ||||||||
Common Name | TCM_006269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 102aa MW: 11390.9 Da PI: 9.6332 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.2 | 3e-13 | 7 | 98 | 7 | 97 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SSSEE..EEEEE CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..grsefelvvkvf 97 + d ++l++ kkf +e + +++ ++t++de+g W++k++ k++++ vl++ W +Fv+ n +++gD v ++ + ++se+e+++ v+ Thecc1EG006269t1 7 TVDGDDINQLTITKKFDAEPFPSAAGGGKMTVKDEQGSLWTFKYK-VKSRNKRVLSGHWVHFVRNNCVRVGDRVAISNNdgWSSEAEYKIEVI 98 557777899*******7777555567779***************5.44444579******************999994432337777777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.588 | 1 | 101 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.18E-11 | 3 | 77 | No hit | No description |
SuperFamily | SSF101936 | 1.12E-12 | 4 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-13 | 4 | 84 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.0E-10 | 9 | 99 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MAILEKTVDG DDINQLTITK KFDAEPFPSA AGGGKMTVKD EQGSLWTFKY KVKSRNKRVL 60 SGHWVHFVRN NCVRVGDRVA ISNNDGWSSE AEYKIEVIRG F* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017632671.1 | 1e-25 | PREDICTED: uncharacterized protein LOC108475196 | ||||
TrEMBL | A0A061DXT2 | 5e-69 | A0A061DXT2_THECC; Uncharacterized protein | ||||
STRING | EOX97177 | 8e-70 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 3e-07 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006269t1 |
Entrez Gene | 18607233 |
Publications ? help Back to Top | |||
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