PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006259t1 | ||||||||
Common Name | TCM_006259 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 118aa MW: 13771.1 Da PI: 10.8993 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.7 | 1e-13 | 4 | 91 | 1 | 87 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.gr 87 f+k lt+ d k rl +p + + + g+ s++l+++d+s r W++++++rkk+ v+++GW eF + n+L+ gD v +l+ g+ Thecc1EG006259t1 4 FIKRLTQTDIDK--RLAIPTNSLVYFpgfRGN--HSVELKVKDKSHRLWTFRCSIRKKRYLkPVFSSGWLEFIRNNNLRIGDKVSVRLEqGH 91 677776666665..599**9999655966444..799****************77555543699********************99987444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 9.107 | 2 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.97E-16 | 3 | 90 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-17 | 3 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-13 | 3 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0038 | 4 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-10 | 4 | 89 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
MELFIKRLTQ TDIDKRLAIP TNSLVYFPGF RGNHSVELKV KDKSHRLWTF RCSIRKKRYL 60 KPVFSSGWLE FIRNNNLRIG DKVSVRLEQG HLSGVEYGIE VQRKIRLLGK DVWADVL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021286448.1 | 2e-78 | AP2/ERF and B3 domain-containing transcription factor RAV1-like | ||||
TrEMBL | A0A061DYQ7 | 6e-80 | A0A061DYQ7_THECC; Uncharacterized protein | ||||
STRING | EOX97171 | 1e-80 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16093 | 4 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 6e-07 | related to ABI3/VP1 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006259t1 |
Entrez Gene | 18607227 |
Publications ? help Back to Top | |||
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