PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006254t1 | ||||||||
Common Name | TCM_006254 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | ZF-HD | ||||||||
Protein Properties | Length: 168aa MW: 18159.4 Da PI: 5.9956 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 75.2 | 9.2e-24 | 37 | 91 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +++Y eC++N as+Gg+ +DGC f++ +++ ++al Ca CgCHR+FHR+ v Thecc1EG006254t1 37 GATYMECRRNYVASIGGYIIDGCPKFVEGGHDDEIKEALLCATCGCHRSFHRKVV 91 689*************************96666899****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-11 | 38 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.3E-22 | 39 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.5E-19 | 39 | 89 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.741 | 40 | 90 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MEKARNSPDQ INNVADIQAR AGSGQGINPG SHVVEQGATY MECRRNYVAS IGGYIIDGCP 60 KFVEGGHDDE IKEALLCATC GCHRSFHRKV VLPPPHLRDT RYSIMNYLRS LPLAALQPRP 120 PTPWLMQSPI LPNCELIEGQ GSSTSPDESE SDSGDEINQA SKINKAG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022762552.1 | 1e-69 | uncharacterized protein LOC111308491 | ||||
TrEMBL | A0A061DXS4 | 1e-121 | A0A061DXS4_THECC; Uncharacterized protein | ||||
STRING | EOX97167 | 1e-122 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22076 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50890.1 | 4e-18 | homeobox protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006254t1 |
Entrez Gene | 18607223 |
Publications ? help Back to Top | |||
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