PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG006253t1 | ||||||||
Common Name | TCM_006253 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 216aa MW: 24366.8 Da PI: 4.3071 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 66.6 | 4.6e-21 | 64 | 116 | 2 | 56 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 ++v+Y eC++N G ++vDGC Ef++ e g +a+ C CgCHR+FHR+ Thecc1EG006253t1 64 QGVTYMECRRNVSLPAGRYSVDGCSEFLKR--EAGRENAMLCDTCGCHRSFHRKV 116 6799************************98..6689*****************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 4.0E-8 | 66 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.5E-19 | 66 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-14 | 67 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 17.525 | 68 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MLLPKLKKSR FTCFKPYHSP SSSLSIHFPL LSVMDDDNGA GHEQGQAQAN AVRRRINRQA 60 VGEQGVTYME CRRNVSLPAG RYSVDGCSEF LKREAGRENA MLCDTCGCHR SFHRKVLPTL 120 YPEATHYLVF NDIPSVRPMP QSLQPPIPLV PQPELPHEQV AESESEEEEE EEEEEEEEER 180 SGTDEESEER SELDSESEVD EVEMINGGEK DSKED* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021286447.1 | 6e-94 | zinc-finger homeodomain protein 2-like | ||||
TrEMBL | A0A061DYQ1 | 1e-155 | A0A061DYQ1_THECC; Uncharacterized protein | ||||
STRING | EOX97166 | 1e-156 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18835.1 | 1e-12 | mini zinc finger |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG006253t1 |
Entrez Gene | 18607222 |
Publications ? help Back to Top | |||
---|---|---|---|
|