PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006241t1 | ||||||||
Common Name | TCM_006241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 14219.8 Da PI: 10.9725 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.9 | 1.3e-16 | 14 | 102 | 13 | 96 |
TT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++rl++p k ++++ ++ + ++ ++d esgr+W++++ rkk + vltkGW+eFv +++L+ gD v F+ ++ +++vkv Thecc1EG006241t1 14 EKRLTIPSKALRSFpPLSDKHMVDFAVRDeESGRVWKFRIYTRKKNNNkylkPVLTKGWREFVCSKQLRIGDRVAFY-KQAGAVKYRVKV 102 367************445556789999998999*******44333333577789***********************.333777777777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.997 | 2 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-18 | 4 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-13 | 4 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.2E-5 | 4 | 112 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.94E-16 | 6 | 104 | No hit | No description |
Pfam | PF02362 | 4.6E-13 | 14 | 102 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MAIVLKNLKK TDIEKRLTIP SKALRSFPPL SDKHMVDFAV RDEESGRVWK FRIYTRKKNN 60 NKYLKPVLTK GWREFVCSKQ LRIGDRVAFY KQAGAVKYRV KVERPLKIFG ASVFPSQESV 120 VC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021287100.1 | 4e-72 | B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | A0A061DXM1 | 3e-84 | A0A061DXM1_THECC; AP2/B3-like transcriptional factor family protein, putative | ||||
STRING | EOX97142 | 5e-85 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16920 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 4e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006241t1 |
Entrez Gene | 18607211 |
Publications ? help Back to Top | |||
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