PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG006224t1 | ||||||||
Common Name | TCM_006224 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 172aa MW: 19253.8 Da PI: 10.5314 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.7 | 5.6e-15 | 60 | 154 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+ dv k+ l++p k+++++ g + + desg++W +++++rk++ +v+ +GW eFv++n+L++ D + F+ g+ Thecc1EG006224t1 60 FSKILTKTDVEKR--LSIPTKHLKSFpcfqG-G--HAVNFRAIDESGKVWPLQCSIRKGKYLkpVVF-RGWVEFVRSNKLEVSDKIKFY--GE 144 7899999999986..9*********9*9954.4..35679999***********7655443353444.6********************..78 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 ++e+++kv Thecc1EG006224t1 145 PGGEYMIKVK 154 9999999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.3E-17 | 58 | 148 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.361 | 58 | 157 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.11E-18 | 59 | 155 | No hit | No description |
SuperFamily | SSF101936 | 3.14E-14 | 59 | 152 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.5E-11 | 60 | 153 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.0E-7 | 60 | 157 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MQKNRISSLN RDKSRCLAVG NIKDKLQTCL LLSSECFPMP LIKSDSFAEK KTVVSMAIIF 60 SKILTKTDVE KRLSIPTKHL KSFPCFQGGH AVNFRAIDES GKVWPLQCSI RKGKYLKPVV 120 FRGWVEFVRS NKLEVSDKIK FYGEPGGEYM IKVKKPVKVF GAIIAYAPAH G* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011010223.1 | 1e-36 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
Refseq | XP_011012047.1 | 1e-36 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | A0A061DWD8 | 1e-122 | A0A061DWD8_THECC; AP2/B3-like transcriptional factor family protein, putative | ||||
STRING | EOX97124 | 1e-123 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16093 | 4 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 5e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG006224t1 |
Entrez Gene | 18607197 |
Publications ? help Back to Top | |||
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