PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005977t1
Common NameTCM_005977
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 351aa    MW: 39747.8 Da    PI: 7.707
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005977t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W++eEde+lv++++ +G  +W+++++  g+ R++k+c++rw +yl
  Thecc1EG005977t1 13 RGLWSPEEDEKLVRYITTHGHASWSSVPKLAGLQRCGKSCRLRWINYL 60
                      788*******************************************97 PP
2Myb_DNA-binding53.74.9e-1766109146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Thecc1EG005977t1  66 RGSFTPQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                       89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-25463IPR009057Homeodomain-like
PROSITE profilePS5129417.093860IPR017930Myb domain
SuperFamilySSF466892.53E-2910107IPR009057Homeodomain-like
SMARTSM007174.7E-121262IPR001005SANT/Myb domain
PfamPF002493.0E-151360IPR001005SANT/Myb domain
CDDcd001677.27E-101660No hitNo description
PROSITE profilePS5129426.65561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2664116IPR009057Homeodomain-like
SMARTSM007172.4E-1665113IPR001005SANT/Myb domain
PfamPF002491.7E-1566109IPR001005SANT/Myb domain
CDDcd001671.51E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVHHCCNKQK VKRGLWSPEE DEKLVRYITT HGHASWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT PQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLPN PIYNINGSSN YGKSSCKLSS CIYDEQPTFR STVISVVGND DSYPVDMKPP  180
SLITSLPAAS SVPVPVPAPP DDGYYSQSCS TLLHEGISTI PTGEFQDQKR DIVQTIREQN  240
PHASKESPRR SSWESLLIPF SSTHPSYHQP GLGRSDCMWE WDGIEPTENK AVVLHRKQQA  300
VANPPEQRVC EVEIEKRKDY YFSGAQDKEM EASFESYCNF EFDTLVSYGI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31131157108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007040989.20.0PREDICTED: myb-related protein 308
TrEMBLA0A061DVT90.0A0A061DVT9_THECC; Myb domain protein 67
STRINGEOX968200.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79552539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.11e-83myb domain protein 67
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]