PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005895t1
Common NameTCM_005895
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 459aa    MW: 52298.5 Da    PI: 7.106
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005895t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-06226126
                      --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                      +k++lC+ffa  G C  G+ C F+H+
  Thecc1EG005895t1  2 PKRVLCKFFAH-GACLKGEHCEFSHD 26
                      79*****6666.*************5 PP

2zf-CCCH25.42.4e-083454526
                      --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                      +C ++++ G+C+yG+rC++ H+
  Thecc1EG005895t1 34 ICTYYQK-GICSYGSRCRYEHV 54
                      7******.***********997 PP

3zf-CCCH17.28.9e-06143165326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                       +++C+ fa+ G C++G++C  +Hg
  Thecc1EG005895t1 143 RSICS-FAAAGNCPRGEKCAHIHG 165
                       67899.*************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.028128IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-7426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7092956IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-43055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-53253IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-63454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.911140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.0057141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4145165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.105.8E-10205268IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578504.04E-9206270No hitNo description
CDDcd001621.28E-4208268No hitNo description
SMARTSM001842.9E-7209266IPR001841Zinc finger, RING-type
PfamPF000974.2E-7209266IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.357209267IPR001841Zinc finger, RING-type
PROSITE patternPS005180233242IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.77296325IPR000571Zinc finger, CCCH-type
SMARTSM003560.15296324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MPKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GICSYGSRCR YEHVRASQSD  60
LSASSSSTVL RQSLISDSVP LGPSLTTTFG GSVVHPSASA EFPGSSRAFL PPTKQAWNLE  120
SEHQALSDNR DFVEPRRVNP AERSICSFAA AGNCPRGEKC AHIHGDLCAT CGKHCLHPFR  180
PQEREEHIKM CEKKQKHLEA LKRSQEIECS VCLDRVLSKP TAAERKFGLL SECDHPFCIS  240
CIRNWRSSSP SSGMDVNTAL RTCPICRKLS YFVIPSVIWY CTPEEKQEIV DSYKAKLRSI  300
DCKHFNFGNG NCPFGTSCFY KHTVKPGSYV WKYHRPPPRR FNFMDMDAIF DVFEQLIAED  360
EMDIFDAEDF EYDDLTPLEM AFLLMQQDFE SMRSSWCFDR LPPFLSGRRW ILEFVNLHAY  420
RDGRLEEVVL RHLGAEDGHT IIAKNIRLSD YLSDLHIG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021281471.10.0putative RING-type E3 ubiquitin transferase C3H69 isoform X2
SwissprotE0X9N41e-152C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A061E3860.0A0A061E386_THECC; Zinc finger family protein isoform 1
STRINGEOX967030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29442763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-141C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]