PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG005895t1 | ||||||||
Common Name | TCM_005895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 459aa MW: 52298.5 Da PI: 7.106 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.8e-06 | 2 | 26 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +k++lC+ffa G C G+ C F+H+ Thecc1EG005895t1 2 PKRVLCKFFAH-GACLKGEHCEFSHD 26 79*****6666.*************5 PP | |||||||
2 | zf-CCCH | 25.4 | 2.4e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ G+C+yG+rC++ H+ Thecc1EG005895t1 34 ICTYYQK-GICSYGSRCRYEHV 54 7******.***********997 PP | |||||||
3 | zf-CCCH | 17.2 | 8.9e-06 | 143 | 165 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C +Hg Thecc1EG005895t1 143 RSICS-FAAAGNCPRGEKCAHIHG 165 67899.*************98887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.028 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-7 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.709 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-4 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.5E-6 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.8E-4 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.911 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0057 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.3E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 5.8E-10 | 205 | 268 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 4.04E-9 | 206 | 270 | No hit | No description |
CDD | cd00162 | 1.28E-4 | 208 | 268 | No hit | No description |
SMART | SM00184 | 2.9E-7 | 209 | 266 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 4.2E-7 | 209 | 266 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE profile | PS50089 | 12.357 | 209 | 267 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 233 | 242 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.77 | 296 | 325 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.15 | 296 | 324 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MPKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GICSYGSRCR YEHVRASQSD 60 LSASSSSTVL RQSLISDSVP LGPSLTTTFG GSVVHPSASA EFPGSSRAFL PPTKQAWNLE 120 SEHQALSDNR DFVEPRRVNP AERSICSFAA AGNCPRGEKC AHIHGDLCAT CGKHCLHPFR 180 PQEREEHIKM CEKKQKHLEA LKRSQEIECS VCLDRVLSKP TAAERKFGLL SECDHPFCIS 240 CIRNWRSSSP SSGMDVNTAL RTCPICRKLS YFVIPSVIWY CTPEEKQEIV DSYKAKLRSI 300 DCKHFNFGNG NCPFGTSCFY KHTVKPGSYV WKYHRPPPRR FNFMDMDAIF DVFEQLIAED 360 EMDIFDAEDF EYDDLTPLEM AFLLMQQDFE SMRSSWCFDR LPPFLSGRRW ILEFVNLHAY 420 RDGRLEEVVL RHLGAEDGHT IIAKNIRLSD YLSDLHIG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021281471.1 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 isoform X2 | ||||
Swissprot | E0X9N4 | 1e-152 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A061E386 | 0.0 | A0A061E386_THECC; Zinc finger family protein isoform 1 | ||||
STRING | EOX96703 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2944 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-141 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG005895t1 |
Entrez Gene | 18614638 |
Publications ? help Back to Top | |||
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