PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005881t3
Common NameTCM_005881
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 735aa    MW: 79603.7 Da    PI: 6.3591
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005881t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.4e-07308328526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f++ G C++Gd C +aHg
  Thecc1EG005881t3 308 PCPDFRK-GACRRGDMCEYAHG 328
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.18E-1732166IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-1834185IPR020683Ankyrin repeat-containing domain
PfamPF127967.4E-1179152IPR020683Ankyrin repeat-containing domain
SMARTSM002484.7E-483113IPR002110Ankyrin repeat
PROSITE profilePS5029718.53783186IPR020683Ankyrin repeat-containing domain
CDDcd002048.73E-1585186No hitNo description
SMARTSM002480.0047118150IPR002110Ankyrin repeat
PROSITE profilePS5008810.846118153IPR002110Ankyrin repeat
SMARTSM003564.0E-6303329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4307330IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-5308328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582308330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4336366IPR000571Zinc finger, CCCH-type
SMARTSM0035635338361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MCGGPEQSKS ESTPASTREP TPNAKDMDHL TVKTEDSFSS LLELASNNDV EGIKQSIVQD  60
ASSIDEVGLW YSREKSSNQI VAKHRTPLMV AATYGSVDAV KLILTHSAAD VNLSCDTDKS  120
TALHCAASGG SLHAIDVVKL LSSAGADPNC TDAIGHRPVD VVVVHPKLQS MRAVLEELLS  180
GHVSDDSFRE HNLRISIDNS TSSSPTLSSS LENGSPPSPS NLASSPMASK FNDIPVNSAP  240
EKKEYPVDPS LPDIKNSIYA TDEFRMFSFK IRPCSRAYSH DWTECPFVHP GENARRRDPR  300
KYHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHT  360
AEELRPLYVS TGSAVPSPRS SASAANVMDM AAAMSLLPGS PSSVSGMSHS PFNQSMSPSA  420
NGLSHSSAAW PQPNVPTLHL PGSNLQSSRL RSSLSARDIP PEDFDMLRDF DAQQQILNDL  480
TCFSQSRNNS VSVSHSGRSK TLTPSNLEEL FSAEISSSPR YTDQTAASAV FSPTHKSAVL  540
NQFQQQQSIL SPINTNVFSP KNIEHPLLQA SFGVGSPGRM SPRSTEPISP MAARISAIVQ  600
REKQQQQLRS LSSRELGSNN LASIVGSPVN SSWSKWGSPN GKLDWSVNGD EMGQLRRSSS  660
FELGNNGEEP DLSWVQSLVK ESPPEMMKEK LAVSVPGGAS SVEVLNNSNS QIDSVDHSVI  720
GAWLEQMQLD QLVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052531.20.0PREDICTED: zinc finger CCCH domain-containing protein 30
RefseqXP_007052533.20.0PREDICTED: zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A061DVA60.0A0A061DVA6_THECC; CCCH-type zinc finger protein with ARM repeat domain isoform 1
STRINGEOX966900.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]