PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005818t1
Common NameTCM_005818
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MIKC_MADS
Protein Properties Length: 376aa    MW: 42280.3 Da    PI: 8.3334
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005818t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.6e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien   rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e++s
  Thecc1EG005818t1  9 KRIENANSRQVTFSKRRAGLLKKAKELAILCDAEVAVIIFSNTGKLFEFAS 59
                      79***********************************************86 PP
2K-box62.12.1e-21128206987
             K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                       +e++ +++ ++e ++Lk+ei +Lq +q +llG+dL+sLslkeLq LeqqL+++l ++++kK++ll+eq+e+++ + +el
  Thecc1EG005818t1 128 VEHKAEKQDSKEEDNLKDEIAKLQMKQLQLLGKDLTSLSLKELQVLEQQLNEGLLSVKEKKEQLLMEQLEQSRVQVEEL 206
                       5566778899999***********************************************************9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.562161IPR002100Transcription factor, MADS-box
CDDcd002651.17E-37261No hitNo description
SuperFamilySSF554558.11E-29272IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-293859IPR002100Transcription factor, MADS-box
PfamPF014863.8E-14129206IPR002487Transcription factor, K-box
PROSITE profilePS5129711.455133237IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAKELAILCD AEVAVIIFSN TGKLFEFASS  60
GSFSKQHVSL CQCVPVGLQW SSIIYIMEVY GRNSSRLYKM EAIIGDDMKK TLSRYDKCAQ  120
GTPEIALVEH KAEKQDSKEE DNLKDEIAKL QMKQLQLLGK DLTSLSLKEL QVLEQQLNEG  180
LLSVKEKKEQ LLMEQLEQSR VQVEELRGFF PSTARPVQSY LECYAVERKN SLMNHSIPSP  240
DVTCNCTVEK GDSDTTLYLG IDQGLVLVVN LVLQTFSSPP TALVKGTILI KEALLHLCCQ  300
VTITRERNLK EKLIPMTQRA NWGCCDSFLH GVALPFVGIP ELRYGGRLSF QVMDIVEQLL  360
KKEKVRDIAK LAFLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-18160160MEF2C
5f28_B4e-18160160MEF2C
5f28_C4e-18160160MEF2C
5f28_D4e-18160160MEF2C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6313959e-84AY631395.1 Gossypium hirsutum MADS9 protein (MADS-9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017975249.11e-136PREDICTED: agamous-like MADS-box protein AGL15
RefseqXP_021281503.11e-136agamous-like MADS-box protein AGL15
TrEMBLA0A061DX030.0A0A061DX03_THECC; AGAMOUS-like 15, putative
STRINGEOX965960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-50AGAMOUS-like 15
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]