PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005707t1
Common NameTCM_005707
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 211aa    MW: 23191.3 Da    PI: 8.7962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005707t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.52.5e-21112162255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp++ng   r++lg++ t+e+Aa a+++a+ k++g
  Thecc1EG005707t1 112 HYRGVRRRP-WGKYAAEIRDPKKNG--SRVWLGTYETPEDAALAYDQAAFKMRG 162
                       7********.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.54E-30112172No hitNo description
PfamPF008473.0E-15112162IPR001471AP2/ERF domain
SMARTSM003802.3E-40112176IPR001471AP2/ERF domain
PROSITE profilePS5103223.986112170IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-23112171IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-33112171IPR001471AP2/ERF domain
PRINTSPR003671.2E-13113124IPR001471AP2/ERF domain
PRINTSPR003671.2E-13152172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MWEIIILSKK IISMESDLAL LESIRQHLLA DDFEASMGLT ASFHGSTPAY LRGASFTSLL  60
SGENWSATAT PSSEPLGLTN AVKAEPAGDV LMEEETVHVA GPEPYAPPKM EHYRGVRRRP  120
WGKYAAEIRD PKKNGSRVWL GTYETPEDAA LAYDQAAFKM RGSKAKLNFP HLIGSGDLEL  180
VEPIRASPKR RSPEQPSTTS LSKDTPKRRR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-33109177270ATERF1
3gcc_A3e-33109177270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188209KRRSPEQPSTTSLSKDTPKRRR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017985487.11e-152PREDICTED: ethylene-responsive transcription factor 1
SwissprotQ8L9K14e-44ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A061DWK41e-152A0A061DWK4_THECC; Ethylene-responsive element binding factor 13, putative
STRINGEOX964611e-152(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-46ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]