PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005704t1
Common NameTCM_005704
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 189aa    MW: 20153.5 Da    PI: 8.2044
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005704t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.8e-19106155355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GVr+++ +g+++AeIrdp++ g  +r +lg++ t+e+Aa a+++a+ +++g
  Thecc1EG005704t1 106 YRGVRRRP-WGKYAAEIRDPKKKG--ARLWLGTYETPEDAALAYDKAAFEIRG 155
                       9*******.**********96643..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-13105155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32105164IPR001471AP2/ERF domain
PROSITE profilePS5103224.223105163IPR001471AP2/ERF domain
CDDcd000181.73E-30105165No hitNo description
SMARTSM003801.0E-38105169IPR001471AP2/ERF domain
PRINTSPR003671.6E-13106117IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23106164IPR016177DNA-binding domain
PRINTSPR003671.6E-13145165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MWGESTSASA SDHDLALLDS ISEDLLADDF EASLKSSDFG RTFSFTSLLL NASTQPLKLG  60
SEFGSGCPAP SNPTDSPAAP EKAEVPPLKA SQGEAAGPPR GKGVNYRGVR RRPWGKYAAE  120
IRDPKKKGAR LWLGTYETPE DAALAYDKAA FEIRGSKAKL NFPHLIGSSN STEPVRVCPR  180
RRSPDTTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-30102168268ATERF1
3gcc_A5e-30102168268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017976755.11e-129PREDICTED: ethylene-responsive transcription factor 13
SwissprotQ8L9K14e-48ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A061E2E41e-133A0A061E2E4_THECC; Ethylene-responsive element binding factor 13, putative
STRINGEOX964581e-134(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-50ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]