PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG005620t1 | ||||||||
Common Name | TCM_005620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | SBP | ||||||||
Protein Properties | Length: 429aa MW: 46568.9 Da PI: 8.0583 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.6 | 2.3e-40 | 190 | 267 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Thecc1EG005620t1 190 RCQVEGCHVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 267 6**************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-35 | 185 | 252 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.496 | 188 | 265 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.49E-38 | 189 | 267 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.9E-32 | 191 | 264 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MENGGSMFMG NQGQTGNSSI NLAWDMRGLS PTTATVFDWG RNNNNTTNGL NLYATSTATT 60 AAAAATRAET TASSCNALPE ISTAHPLMFL PHHDNATLAH HLNQQHALYT GDGSHMHPDP 120 HLVCLKLGKR HYFEDSTALT ERHVAAGFSI GKKGKPYYNN NNLGGGGGGG GGIGPSSSTA 180 VLGPPATVPR CQVEGCHVAL VNAKDYHRRH KVCEMHSKAP KVVVLGLEQR FCQQCSRFHV 240 VSEFDDSKRS CRRRLAGHNE RRRKSSHHDS ASRNSAQDNK LMTGRFPYLS SPTGRALSLL 300 SSRADSWIFS SDLSSRSSAA LRELIAENRA AILARQLILD RDWHLHHHAM EDLGDAQPGS 360 SSVAVQQHPS LPEPHGWDRF PVTGAQVTLD LMQASSSAFE MLSVRGKTKE EEEECSELWN 420 SLQGTHVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-30 | 191 | 264 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007052205.2 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q01JD1 | 5e-58 | SPL7_ORYSI; Squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q7XT42 | 3e-58 | SPL7_ORYSJ; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A061DVD0 | 0.0 | A0A061DVD0_THECC; Squamosa promoter-binding-like protein 10, putative | ||||
STRING | EOX96362 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15613 | 9 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 6e-37 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG005620t1 |
Entrez Gene | 18614394 |
Publications ? help Back to Top | |||
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