PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005620t1
Common NameTCM_005620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family SBP
Protein Properties Length: 429aa    MW: 46568.9 Da    PI: 8.0583
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005620t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.62.3e-40190267178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  Thecc1EG005620t1 190 RCQVEGCHVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH 267
                       6**************************************************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-35185252IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.496188265IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.49E-38189267IPR004333Transcription factor, SBP-box
PfamPF031108.9E-32191264IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MENGGSMFMG NQGQTGNSSI NLAWDMRGLS PTTATVFDWG RNNNNTTNGL NLYATSTATT  60
AAAAATRAET TASSCNALPE ISTAHPLMFL PHHDNATLAH HLNQQHALYT GDGSHMHPDP  120
HLVCLKLGKR HYFEDSTALT ERHVAAGFSI GKKGKPYYNN NNLGGGGGGG GGIGPSSSTA  180
VLGPPATVPR CQVEGCHVAL VNAKDYHRRH KVCEMHSKAP KVVVLGLEQR FCQQCSRFHV  240
VSEFDDSKRS CRRRLAGHNE RRRKSSHHDS ASRNSAQDNK LMTGRFPYLS SPTGRALSLL  300
SSRADSWIFS SDLSSRSSAA LRELIAENRA AILARQLILD RDWHLHHHAM EDLGDAQPGS  360
SSVAVQQHPS LPEPHGWDRF PVTGAQVTLD LMQASSSAFE MLSVRGKTKE EEEECSELWN  420
SLQGTHVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-301912641184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052205.20.0PREDICTED: squamosa promoter-binding-like protein 7
SwissprotQ01JD15e-58SPL7_ORYSI; Squamosa promoter-binding-like protein 7
SwissprotQ7XT423e-58SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A061DVD00.0A0A061DVD0_THECC; Squamosa promoter-binding-like protein 10, putative
STRINGEOX963620.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15613914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.46e-37squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]