PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005613t1
Common NameTCM_005613
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 274aa    MW: 30633.7 Da    PI: 7.9023
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005613t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15.1e-18171205135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Thecc1EG005613t1 171 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 205
                       *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-842261IPR016679Transcription factor, GATA, plant
SMARTSM004011.4E-16165215IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.95E-14169228No hitNo description
Gene3DG3DSA:3.30.50.101.0E-13169203IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.385169201IPR000679Zinc finger, GATA-type
CDDcd002025.51E-14170217No hitNo description
PROSITE patternPS003440171196IPR000679Zinc finger, GATA-type
PfamPF003207.4E-16171205IPR000679Zinc finger, GATA-type
Gene3DG3DSA:1.20.1000.101.8E-4220269No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDMYGLSAPE LFRIDDLLDL SNEELFSSAS SSTASTNNDQ FPPSEAPFSY ASASSSSSSA  60
AFHPSFSTDF THDLCLPSDD VAELEWLSQF VEDSFTDFPS NSIAGTLNPR NDSSFSSKAR  120
SKRSRAATAM KTTTTWTTMS EAAPPFTGNS KTKKEIQRQA SPAADGGVRR CTHCASEKTP  180
QWRTGPLGPK TLCNACGVRY KSGRLVPEYR PAASPTFVLT QHSNSHRKVL ELRRQKEMLR  240
QQQQQQQQQH QQQEQPYRHH QHHRRQQHDF EVC*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00415DAPTransfer from AT3G60530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052192.21e-145PREDICTED: GATA transcription factor 4
SwissprotO497438e-83GATA4_ARATH; GATA transcription factor 4
TrEMBLA0A061DU840.0A0A061DU84_THECC; GATA transcription factor
STRINGEOX963490.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.19e-65GATA transcription factor 4
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]