PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005607t3
Common NameTCM_005607
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 449aa    MW: 48198.3 Da    PI: 6.5804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005607t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.43.4e-052963193255
                       ..TTS-STCHHHHHHHHHHHHHHH CS
               HLH  32 kapskKlsKaeiLekAveYIksLq 55 
                       +++s++ +Ka++L +++eY+k+Lq
  Thecc1EG005607t3 296 HNQSERTDKASMLDEVIEYLKQLQ 319
                       46899******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.521265318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.71E-4296323No hitNo description
SuperFamilySSF474593.14E-6297337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-6297327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSQCVPSWDL DDNPAIARHS LRSNSNSTAP DVPMLDYEVA ELTWENGQLA MHSLGPPRVP  60
AKPLNSTSPS KYTWDKPRAG GTLESIVNQA TSFPYRNVSL DGGRDELVPW FDHHRAAVAA  120
AAVASSSATM TMDALVPCSN RSEDRTTHVM ESIRGLGGTC VVGCSTRVGS CSGPTGTQDD  180
GVLLTGKRAR EARVSVAPEW SSKDQNASAS ATFGTDSQHV TVDSYEKDFG VGFTSTSLGS  240
PENTSSPRPC TKATTADDHD SVCHSRPQRK AGEEDKRKET GKSSVSTKRS RAAAIHNQSE  300
RTDKASMLDE VIEYLKQLQA QVHMMSRMNI PPMMFPMTMQ QQLQMSMMAP MGMGMGMGMG  360
IGMGVMDMST MGRPNITGIS PVLPNPFVTM TPWDGSGDRL QAASAAVMPD PLSAFLACQS  420
QPITMDAYSR MAAMYQQMQH PPASSSKN*
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3932932e-48GQ393293.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0258 SSR marker CGR5167 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052181.20.0PREDICTED: transcription factor UNE10 isoform X2
SwissprotQ8GZ381e-102UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A061E2380.0A0A061E238_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 3
STRINGEOX963370.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-100bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]