PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005607t2
Common NameTCM_005607
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 479aa    MW: 51902.4 Da    PI: 8.1382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005607t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.81.3e-15304349555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Thecc1EG005607t2 304 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 349
                       9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-19297360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-18297358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.48E-17304353No hitNo description
PfamPF000103.3E-13304349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-18305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MCPCKNPLFL FLFLCRVCLC TCVSVCFSIF VVVVDVCDLL CRLDYEVAEL TWENGQLAMH  60
SLGPPRVPAK PLNSTSPSKY TWDKPRAGGT LESIVNQATS FPYRNVSLDG GRDELVPWFD  120
HHRAAVAAAA VASSSATMTM DALVPCSNRS EDRTTHVMES IRGLGGTCVV GCSTRVGSCS  180
GPTGTQDDGV LLTGKRAREA RVSVAPEWSS KDQNASASAT FGTDSQHVTV DSYEKDFGVG  240
FTSTSLGSPE NTSSPRPCTK ATTADDHDSV CHSRPQRKAG EEDKRKETGK SSVSTKRSRA  300
AAIHNQSERK RRDKINQRMK TLQKLVPNSS KTDKASMLDE VIEYLKQLQA QVHMMSRMNI  360
PPMMFPMTMQ QQLQMSMMAP MGMGMGMGMG IGMGVMDMST MGRPNITGIS PVLPNPFVTM  420
TPWDGSGDRL QAASAAVMPD PLSAFLACQS QPITMDAYSR MAAMYQQMQH PPASSSKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1307312ERKRRD
2308313RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3932931e-71GQ393293.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0258 SSR marker CGR5167 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017969485.10.0PREDICTED: transcription factor UNE10 isoform X1
SwissprotQ8GZ381e-112UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A061DVA80.0A0A061DVA8_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 2
STRINGEOX963370.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-110bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]